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MZ577098.1__QZI95085.1__Melnitz3EXVC039M_136__00130

Bact-Vir

MZ577098.1__QZI95085.1__Melnitz3EXVC039M_136__00130

Identity

Accession:
MZ577098 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Methylophilales_phage_Melnitz-3_EXVC039M

TaxID: 2832341

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.64 45.0 4.36e-01 73.1% 93.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 43.0 3.16e-01 74.6% 34.6%
2bszA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.61 46.0 3.47e-01 88.1% 32.4%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 51.0 3.36e-01 100.0% 95.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 44.0 4.41e-01 94.0% 75.4%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 3.17e-01 70.1% 83.5%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.60 43.0 4.20e-01 76.1% 94.7%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 2.71e-01 71.6% 46.7%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 2.69e-01 71.6% 48.7%
1upsB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 2.65e-01 71.6% 46.4%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 4.27e-01 82.1% 88.2%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.59 46.0 3.27e-01 85.1% 40.5%
1ajoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.10e-01 82.1% 92.5%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.01e-01 74.6% 68.9%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 45.0 4.20e-01 88.1% 74.4%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 3.00e-01 91.0% 27.5%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 46.0 3.02e-01 98.5% 87.9%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.55 37.0 2.85e-01 70.1% 29.4%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.57e-01 92.5% 87.9%
2vy0B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 2.69e-01 77.6% 53.2%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.66e-01 97.0% 83.2%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.53 39.0 4.04e-01 83.6% 85.5%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 4.04e-01 91.0% 100.0%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.80e-01 80.6% 70.3%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.95e-01 89.6% 70.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 42.0 2.77e-01 91.0% 19.9%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 45.0 3.44e-01 100.0% 93.6%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.61e-01 80.6% 58.8%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.67e-01 91.0% 19.3%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 40.0 3.74e-01 94.0% 65.9%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.19e-01 88.1% 50.3%
1xl7A02 3.30.559.70 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 0.52 45.0 2.94e-01 100.0% 58.7%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 41.0 2.91e-01 91.0% 38.1%
2odhA02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.51 38.0 3.28e-01 80.6% 63.6%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 38.0 3.59e-01 95.5% 64.7%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 37.0 3.64e-01 82.1% 73.0%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.86e-01 88.1% 34.1%
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 2.97e-01 82.1% 47.0%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.50 36.0 3.57e-01 82.1% 70.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076085 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.64 44.0 3.14e-01 73.1% 68.1%
3951704 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.63 33.0 3.28e-01 82.1% 47.1%
3288997 304.125.1.2 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins › DUF6461 0.61 45.0 3.52e-01 79.1% 82.0%
4415878 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.60 45.0 3.04e-01 83.6% 36.1%
4487949 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.60 48.0 4.08e-01 92.5% 99.2%
4316823 296.1.1.3 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.59 48.0 3.99e-01 88.1% 95.8%
3993085 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.59 47.0 3.38e-01 86.6% 40.0%
4980090 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 41.0 3.90e-01 80.6% 61.3%
4414836 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.59 45.0 2.73e-01 83.6% 21.5%
3706874 5.1.3.243 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_WDR35_2nd 0.58 47.0 3.04e-01 89.6% 25.4%
4202859 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.58 44.0 2.97e-01 83.6% 38.7%
3601202 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.58 47.0 3.03e-01 89.6% 45.9%
3620049 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.57 47.0 3.05e-01 91.0% 23.9%
3279474 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.57 39.0 3.30e-01 71.6% 74.8%
4950889 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 41.0 3.97e-01 82.1% 68.0%
3586307 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 45.0 3.61e-01 92.5% 44.6%
3233686 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.56 47.0 3.83e-01 100.0% 76.6%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.56 46.0 3.75e-01 100.0% 71.3%
5011687 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.56 42.0 2.94e-01 83.6% 38.4%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.56 39.0 3.53e-01 76.1% 96.0%
3388925 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 45.0 3.97e-01 92.5% 61.1%
3938003 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.56 45.0 3.97e-01 92.5% 61.1%
3508366 5.1.4.492 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd, Beta-prop_WDR35_TULP_N 0.56 46.0 2.81e-01 91.0% 19.0%
3481353 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.89e-01 91.0% 37.1%
5075725 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 38.0 3.05e-01 73.1% 85.5%
5033008 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.55 37.0 3.19e-01 70.1% 62.7%
3399742 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.54 43.0 2.78e-01 88.1% 19.4%
4965146 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 42.0 2.65e-01 85.1% 59.5%
4232128 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 39.0 3.67e-01 80.6% 63.7%
3788776 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.54 48.0 3.07e-01 100.0% 31.3%
4029844 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.54 39.0 3.70e-01 79.1% 95.3%
1447939 11.36.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Csd4 Ig-like domain › Csd4 Ig-like domain › Peptidase_M99_m 0.54 33.0 3.22e-01 88.1% 55.4%
2516891 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.53 45.0 2.91e-01 98.5% 86.0%
3793874 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 45.0 3.70e-01 92.5% 67.5%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.53 44.0 3.83e-01 97.0% 80.9%
4889001 5.1.4.280 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st 0.53 44.0 2.80e-01 91.0% 22.6%
163054 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 42.0 3.95e-01 89.6% 70.7%
3926611 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.53 43.0 2.81e-01 91.0% 30.2%
3197429 244.2.1.10 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.53 43.0 2.87e-01 95.5% 74.5%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.53 41.0 2.81e-01 86.6% 38.9%
4971298 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 39.0 3.77e-01 82.1% 69.3%
3535426 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 43.0 3.48e-01 89.6% 46.2%
3742310 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.53 44.0 2.92e-01 95.5% 33.1%
3991064 319.1.1.11 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SGS 0.53 45.0 3.57e-01 95.5% 72.7%
3216631 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 42.0 3.80e-01 94.0% 64.4%
3629722 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.55e-01 95.5% 57.9%
3894260 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.52 42.0 2.73e-01 92.5% 18.3%
3279244 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.37e-01 86.6% 53.0%
3990244 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 42.0 3.59e-01 95.5% 54.2%
3298595 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.51 41.0 3.18e-01 89.6% 49.0%
3284412 241.11.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.51 38.0 3.35e-01 83.6% 53.3%
4029231 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 43.0 3.73e-01 95.5% 70.5%
4947563 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.50 42.0 2.72e-01 94.0% 93.1%
4542362 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.50 41.0 2.72e-01 94.0% 91.3%
4860677 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.50 42.0 2.65e-01 94.0% 31.9%