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MZ577098.1__QZI95094.1__Melnitz3EXVC039M_145__00139

Bact-Vir

MZ577098.1__QZI95094.1__Melnitz3EXVC039M_145__00139

Identity

Accession:
MZ577098 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-86
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.70 55.0 5.57e-01 91.7% 85.0%
3aqpA02 3.30.70.3220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 56.0 4.25e-01 98.3% 97.5%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.66 46.0 3.48e-01 91.7% 30.8%
2dgxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 50.0 4.65e-01 86.7% 100.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 55.0 5.06e-01 91.7% 76.3%
2av5A00 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.65 53.0 4.47e-01 93.3% 87.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 52.0 4.83e-01 91.7% 71.1%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 55.0 5.31e-01 100.0% 89.6%
5jm6A02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.62 51.0 3.88e-01 91.7% 69.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 49.0 3.69e-01 93.3% 48.5%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 3.94e-01 100.0% 52.4%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 4.15e-01 100.0% 49.3%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.61 49.0 3.82e-01 91.7% 72.7%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 43.0 3.50e-01 93.3% 38.1%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.60 54.0 4.43e-01 100.0% 97.2%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.60 54.0 4.28e-01 100.0% 58.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 50.0 4.14e-01 98.3% 65.0%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.59 49.0 4.10e-01 100.0% 81.9%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 4.05e-01 96.7% 47.9%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.58 52.0 4.24e-01 100.0% 64.9%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.58 46.0 3.36e-01 91.7% 45.4%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.57 45.0 4.52e-01 95.0% 85.7%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 50.0 3.28e-01 100.0% 91.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 48.0 4.30e-01 100.0% 71.7%
4p6qA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 43.0 4.10e-01 88.3% 100.0%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.47e-01 93.3% 66.4%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 46.0 3.02e-01 100.0% 34.5%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.55 46.0 3.44e-01 100.0% 53.5%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.00e-01 100.0% 57.8%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.54 38.0 2.81e-01 75.0% 97.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 45.0 4.05e-01 100.0% 71.3%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 47.0 3.77e-01 100.0% 56.1%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 4.15e-01 93.3% 87.3%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 43.0 3.58e-01 95.0% 95.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.93e-01 100.0% 70.8%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 44.0 2.87e-01 100.0% 31.1%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 38.0 2.92e-01 81.7% 93.8%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 39.0 2.90e-01 76.7% 28.8%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.35e-01 78.3% 59.1%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 44.0 3.27e-01 100.0% 59.8%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 40.0 3.88e-01 86.7% 100.0%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.92e-01 100.0% 61.2%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.52 40.0 3.73e-01 91.7% 96.4%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.63e-01 100.0% 53.8%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 42.0 3.51e-01 95.0% 84.8%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.35e-01 93.3% 58.7%
1wktA00 2.60.20.20 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.51 35.0 3.12e-01 86.7% 48.9%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 41.0 3.86e-01 93.3% 72.7%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.36e-01 100.0% 53.5%
1y6kR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.46e-01 100.0% 54.4%
1qg3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.65e-01 100.0% 58.7%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.50 40.0 2.72e-01 100.0% 20.1%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.46e-01 100.0% 54.9%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 37.0 2.68e-01 78.3% 97.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053865 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.73 64.0 5.56e-01 96.7% 95.6%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.71 52.0 5.52e-01 91.7% 94.0%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 54.0 5.07e-01 91.7% 70.7%
5013194 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.67 54.0 5.63e-01 90.0% 98.2%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 54.0 4.90e-01 91.7% 66.3%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 53.0 5.23e-01 91.7% 87.7%
4939206 304.156.1.3 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 0.64 44.0 3.52e-01 73.3% 64.8%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 53.0 5.37e-01 90.0% 98.3%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 52.0 4.31e-01 91.7% 50.0%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 54.0 5.30e-01 91.7% 90.6%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 55.0 5.51e-01 93.3% 98.3%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 54.0 4.77e-01 91.7% 68.2%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 54.0 4.50e-01 93.3% 56.2%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 52.0 5.32e-01 90.0% 98.3%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 54.0 4.98e-01 91.7% 77.3%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 53.0 5.28e-01 93.3% 95.2%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 53.0 5.37e-01 91.7% 98.3%
3409700 4114.1.1.2 a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.63 52.0 4.36e-01 98.3% 63.5%
3702557 3945.1.1.0 alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain 0.63 54.0 4.29e-01 100.0% 61.5%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 48.0 4.94e-01 91.7% 87.9%
4978692 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.63 52.0 3.36e-01 95.0% 48.9%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 52.0 4.94e-01 91.7% 82.9%
223776 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.62 54.0 5.09e-01 93.3% 80.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 52.0 4.86e-01 91.7% 77.3%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 50.0 5.19e-01 90.0% 100.0%
3679515 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 41.0 4.56e-01 100.0% 93.3%
3624434 821.1.1.8 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd 0.61 55.0 3.86e-01 100.0% 54.6%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 50.0 4.69e-01 100.0% 76.0%
3686997 304.9.1.6 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.60 46.0 4.48e-01 88.3% 95.7%
1145963 4012.3.1.1 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.59 47.0 4.09e-01 91.7% 99.0%
3628891 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 49.0 4.00e-01 100.0% 52.0%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 47.0 4.64e-01 91.7% 87.7%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 45.0 4.58e-01 90.0% 98.3%
3287357 3115.3.1.0 a+b two layers › GP2-like › P56 › P56 0.58 46.0 4.68e-01 90.0% 100.0%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 48.0 4.52e-01 91.7% 81.3%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.56 39.0 3.35e-01 71.7% 64.4%
3738592 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.56 49.0 3.61e-01 100.0% 72.1%
3650990 274.1.1.44 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 0.56 46.0 3.76e-01 100.0% 60.0%
4175430 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.56 44.0 3.04e-01 91.7% 22.6%
3718776 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 46.0 3.03e-01 100.0% 21.1%
3833029 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.55 45.0 3.66e-01 96.7% 93.1%
4298891 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.55 47.0 3.13e-01 100.0% 31.9%
4329174 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.55 39.0 2.92e-01 78.3% 27.1%
3577792 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.54 45.0 3.73e-01 100.0% 79.2%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.54 44.0 3.69e-01 100.0% 93.3%
3331651 11.1.4.8 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 0.54 46.0 3.59e-01 100.0% 55.0%
3483798 11.2.1.72 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29377 0.54 45.0 3.32e-01 98.3% 98.3%
3264069 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.53 43.0 4.30e-01 98.3% 93.3%
2999708 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.53 39.0 2.85e-01 80.0% 96.0%
4365480 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.53 37.0 2.77e-01 76.7% 26.3%
3235738 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.69e-01 100.0% 53.6%
3943020 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.52 38.0 2.82e-01 80.0% 96.6%
4146398 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.52 37.0 2.75e-01 76.7% 27.1%
2723970 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.52 41.0 3.37e-01 91.7% 52.1%
4680886 69.1.1.14 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.52 42.0 3.22e-01 98.3% 58.2%
3406669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.28e-01 91.7% 48.0%
3757469 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.93e-01 100.0% 69.4%
4872941 10.2.1.43 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C 0.51 39.0 3.26e-01 88.3% 52.1%
3924581 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 43.0 3.86e-01 100.0% 68.9%
4472409 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.51 36.0 2.71e-01 76.7% 27.6%
3929801 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.51 43.0 3.78e-01 100.0% 94.7%
3218957 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.51 43.0 3.57e-01 100.0% 78.3%
3617619 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 40.0 3.27e-01 95.0% 43.7%
4654177 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.50 42.0 2.92e-01 100.0% 73.1%