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MZ577098.1__QZI95160.1__Melnitz3EXVC039M_213__00205

Bact-Vir

MZ577098.1__QZI95160.1__Melnitz3EXVC039M_213__00205

Identity

Accession:
MZ577098 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Methylophilales_phage_Melnitz-3_EXVC039M

TaxID: 2832341

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-78
PDB
Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.97 80.0 7.98e-01 100.0% 84.2%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.88 63.0 6.82e-01 100.0% 86.2%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.88 58.0 5.59e-01 96.0% 61.4%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.85 59.0 6.17e-01 100.0% 79.4%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 57.0 5.81e-01 100.0% 71.6%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 62.0 6.48e-01 100.0% 85.3%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 66.0 5.40e-01 100.0% 48.5%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 56.0 5.79e-01 100.0% 74.6%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 57.0 5.87e-01 98.7% 77.5%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 59.0 6.04e-01 100.0% 79.5%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 60.0 6.02e-01 100.0% 78.7%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 6.23e-01 98.7% 96.7%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 5.49e-01 100.0% 70.7%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.92e-01 100.0% 80.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 5.78e-01 100.0% 81.7%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 5.11e-01 100.0% 57.1%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.84e-01 100.0% 80.8%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.69e-01 100.0% 82.3%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.55e-01 100.0% 84.0%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.66 53.0 4.88e-01 100.0% 67.7%
1aw7A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 33.0 2.81e-01 100.0% 32.5%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 44.0 4.03e-01 82.7% 85.1%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 29.0 3.58e-01 100.0% 81.8%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.55 41.0 3.77e-01 98.7% 61.9%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 2.88e-01 74.7% 32.4%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.39e-01 74.7% 95.2%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 47.0 4.35e-01 100.0% 96.8%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 40.0 2.59e-01 86.7% 91.5%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 40.0 3.04e-01 84.0% 74.9%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 41.0 3.39e-01 94.7% 73.9%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 2.68e-01 80.0% 90.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075579 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 65.0 6.35e-01 100.0% 72.5%
4983255 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.87 64.0 6.41e-01 100.0% 76.0%
3626400 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.86 67.0 5.45e-01 100.0% 46.9%
4030048 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.84 67.0 5.92e-01 100.0% 60.0%
4990442 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.84 63.0 6.21e-01 100.0% 73.8%
2632533 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.84 65.0 6.76e-01 100.0% 88.4%
3483309 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 65.0 5.38e-01 100.0% 48.8%
3812580 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.84 65.0 5.39e-01 100.0% 49.6%
5026934 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.84 62.0 6.08e-01 100.0% 72.5%
4015537 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 61.0 6.07e-01 100.0% 74.4%
5000810 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.83 61.0 5.84e-01 100.0% 68.2%
3401273 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.82 64.0 5.89e-01 100.0% 65.3%
4948069 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 62.0 6.21e-01 100.0% 78.7%
1549365 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.82 63.0 6.10e-01 100.0% 73.5%
3270749 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.81 63.0 6.17e-01 100.0% 77.5%
4993070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 68.0 6.86e-01 100.0% 92.0%
3224038 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.79 61.0 6.18e-01 100.0% 82.7%
3167630 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.78 60.0 5.92e-01 100.0% 77.5%
3189264 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.78 63.0 5.68e-01 100.0% 65.0%
3502962 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.77 63.0 6.22e-01 100.0% 81.2%
4014972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 5.89e-01 100.0% 72.2%
3785079 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 64.0 5.09e-01 100.0% 46.2%
3786143 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 63.0 5.61e-01 100.0% 62.9%
3592930 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.23e-01 100.0% 61.1%
4485354 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 57.0 5.26e-01 100.0% 61.7%
3606838 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 56.0 5.18e-01 100.0% 61.1%
3701868 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 59.0 5.55e-01 100.0% 67.8%
3221732 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.76 62.0 6.12e-01 100.0% 81.2%
3710540 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.76 61.0 6.11e-01 100.0% 85.3%
4876572 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.76 56.0 5.29e-01 100.0% 65.9%
3598052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 59.0 5.54e-01 100.0% 68.9%
3703836 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 69.0 5.92e-01 100.0% 74.8%
3927391 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 61.0 5.48e-01 100.0% 64.1%
3482844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.07e-01 100.0% 81.2%
3712189 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 61.0 5.73e-01 100.0% 72.2%
3703320 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 62.0 6.08e-01 100.0% 83.5%
3725354 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 68.0 5.32e-01 100.0% 56.0%
3915752 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 59.0 5.56e-01 100.0% 71.1%
3786067 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 59.0 5.81e-01 100.0% 80.0%
3168781 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.73 60.0 5.24e-01 100.0% 61.9%
4010995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 6.00e-01 100.0% 88.0%
3593085 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.74e-01 100.0% 70.9%
3722424 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.72 65.0 5.90e-01 100.0% 80.0%
3730294 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.70 57.0 5.60e-01 100.0% 81.2%
3197566 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.70 64.0 5.80e-01 100.0% 78.0%
3597221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.68e-01 100.0% 77.8%
3596655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 63.0 4.86e-01 100.0% 62.5%
4015057 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.64e-01 100.0% 82.0%
3187241 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 62.0 5.44e-01 100.0% 74.5%
3168996 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.68 62.0 5.21e-01 100.0% 64.0%
4013487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.10e-01 98.7% 62.7%
3455165 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 59.0 5.41e-01 100.0% 74.7%
3787684 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 61.0 5.44e-01 100.0% 71.4%
3937258 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.67 53.0 3.95e-01 89.3% 55.1%
4017204 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.65 60.0 5.43e-01 100.0% 80.0%
4982424 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.65 37.0 2.56e-01 74.7% 16.7%
3660020 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.16e-01 81.3% 65.8%
3233110 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 56.0 5.11e-01 100.0% 72.4%
3555586 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 57.0 5.19e-01 100.0% 74.7%
4019995 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.63 58.0 5.06e-01 100.0% 73.6%
5050188 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.68e-01 100.0% 72.2%
3583142 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 46.0 3.48e-01 82.7% 81.6%
3707345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.76e-01 97.3% 95.6%
5001130 101.1.2.44 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.56 32.0 2.99e-01 84.0% 41.0%
3164015 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.89e-01 94.7% 67.2%
3615097 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 43.0 2.70e-01 92.0% 15.1%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.51 40.0 2.77e-01 86.7% 44.2%
3498230 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 33.0 3.26e-01 81.3% 61.3%