←Back to structures

MZ605292.1__QYW06465.1__uan_053__00053

Bact-Vir

MZ605292.1__QYW06465.1__uan_053__00053

Identity

Accession:
MZ605292 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_UAntarctica

TaxID: 2856996

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-78
PDB
Domain cluster: rep: ON323491.1__URG13855.1__X__00092__D17-80
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.72 50.0 4.60e-01 98.5% 57.0%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.68 48.0 4.59e-01 98.5% 64.1%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 47.0 4.37e-01 92.5% 58.8%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.65 58.0 4.69e-01 98.5% 55.3%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.63 54.0 5.24e-01 94.0% 100.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 39.0 3.54e-01 92.5% 45.6%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.62 49.0 4.67e-01 97.0% 74.0%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.60 49.0 3.71e-01 100.0% 36.7%
1kskA02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.59 43.0 3.30e-01 100.0% 32.3%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.59 42.0 4.00e-01 94.0% 63.4%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.58 52.0 5.01e-01 100.0% 94.8%
3fn2A00 3.30.2200.10 Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 0.55 38.0 3.40e-01 100.0% 49.5%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 3.74e-01 92.5% 58.5%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.54 45.0 3.57e-01 95.5% 50.3%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.79e-01 92.5% 58.8%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 46.0 3.58e-01 98.5% 58.1%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.48e-01 98.5% 60.3%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.50 42.0 3.55e-01 100.0% 84.1%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.50 41.0 2.96e-01 95.5% 47.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.76 55.0 5.84e-01 94.0% 86.4%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.75 58.0 6.13e-01 92.5% 94.9%
2526359 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.71 56.0 5.90e-01 100.0% 95.0%
3282462 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.71 49.0 4.70e-01 98.5% 64.0%
4988093 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.71 61.0 5.22e-01 94.0% 66.3%
5002644 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.70 60.0 5.81e-01 92.5% 93.3%
3163706 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.68 47.0 3.99e-01 98.5% 44.5%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.66 41.0 3.95e-01 91.0% 56.0%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 39.0 3.93e-01 92.5% 58.6%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 55.0 5.34e-01 95.5% 97.3%
5025019 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 56.0 5.23e-01 100.0% 90.5%
4990371 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.62 53.0 5.25e-01 94.0% 95.7%
4975116 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.62 54.0 5.07e-01 95.5% 91.3%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 38.0 3.83e-01 92.5% 60.0%
5049368 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.61 47.0 3.65e-01 100.0% 37.3%
4935036 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.61 55.0 5.35e-01 100.0% 95.9%
4070519 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.61 51.0 4.91e-01 92.5% 97.3%
4991571 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 53.0 5.05e-01 98.5% 92.5%
3385835 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.60 53.0 5.04e-01 100.0% 97.5%
4930890 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 42.0 4.11e-01 97.0% 69.3%
1141903 3488.1.1.0 ↗ a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain 0.55 38.0 3.40e-01 100.0% 49.5%
3941988 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 47.0 3.96e-01 100.0% 67.8%
4976162 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 47.0 3.86e-01 98.5% 96.7%
4512371 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.53 46.0 3.52e-01 98.5% 56.9%
4956728 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.52 47.0 3.76e-01 100.0% 93.8%
4970832 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 44.0 3.69e-01 100.0% 95.2%
3792089 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.52 46.0 3.67e-01 100.0% 93.3%
4682340 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.51 43.0 3.63e-01 100.0% 96.0%
4946076 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.51 43.0 3.64e-01 100.0% 96.0%
3302882 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.51 45.0 3.71e-01 100.0% 92.8%
3556801 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.51 43.0 3.60e-01 100.0% 95.2%
D2 high residues 84-149
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ethA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.67 59.0 5.35e-01 98.5% 88.8%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.67 59.0 5.71e-01 98.5% 100.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 44.0 3.81e-01 100.0% 45.5%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 41.0 3.51e-01 100.0% 45.7%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 46.0 2.82e-01 100.0% 14.3%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 44.0 3.85e-01 100.0% 54.1%
3k7mX02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.57 36.0 2.63e-01 100.0% 20.4%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.81e-01 90.9% 66.7%
2fmcA00 3.20.120.10 Alpha Beta › Alpha-Beta Barrel › hfbii hydrophobin › Hydrophobin 0.56 40.0 3.79e-01 75.8% 85.4%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 3.87e-01 98.5% 60.2%
1b37A02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.52 37.0 2.64e-01 100.0% 23.4%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 46.0 4.28e-01 100.0% 83.3%
2dmzA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 44.0 3.99e-01 100.0% 95.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963571 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.79 61.0 6.16e-01 100.0% 83.1%
3239806 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.69 60.0 5.53e-01 97.0% 91.8%
5030835 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.68 61.0 5.64e-01 100.0% 88.2%
4975521 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 60.0 5.56e-01 100.0% 90.6%
5075574 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 60.0 5.66e-01 100.0% 92.5%
3516152 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.67 59.0 5.47e-01 100.0% 92.9%
5049869 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 59.0 5.54e-01 100.0% 93.8%
3946118 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 47.0 4.50e-01 100.0% 68.0%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 43.0 4.12e-01 90.9% 62.7%
4446420 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.61 53.0 4.50e-01 100.0% 88.7%
2069093 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.60 53.0 4.33e-01 100.0% 68.3%
5058340 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 36.0 3.62e-01 100.0% 58.6%
3697243 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.58 51.0 4.12e-01 100.0% 66.2%
3738757 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 37.0 2.24e-01 100.0% 9.1%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.54 37.0 3.62e-01 84.8% 62.7%
5029255 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.52 46.0 3.96e-01 100.0% 97.1%
None — 0.51 34.0 2.14e-01 71.2% 80.1%
3172185 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 45.0 3.78e-01 100.0% 83.6%
3839986 325.1.7.21 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_RND 0.50 45.0 4.42e-01 98.5% 98.6%