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MZ634347.1__UJD05385.1__PWKp16_00031__00031

Bact-Vir

MZ634347.1__UJD05385.1__PWKp16_00031__00031

Identity

Accession:
MZ634347 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-75
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 43.0 4.70e-01 91.5% 74.5%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.67 53.0 3.57e-01 86.4% 95.9%
2jh3A03 3.30.1360.190 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 49.0 4.00e-01 79.7% 78.6%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 51.0 3.95e-01 86.4% 86.4%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 56.0 4.38e-01 100.0% 62.5%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 52.0 3.74e-01 93.2% 48.0%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 3.88e-01 86.4% 85.8%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 55.0 4.29e-01 100.0% 68.2%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 49.0 4.56e-01 86.4% 94.7%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.62 43.0 2.58e-01 72.9% 88.5%
4gqzA00 2.60.40.3700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 48.0 3.57e-01 86.4% 35.3%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.61 48.0 3.44e-01 81.4% 68.2%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.61 43.0 3.53e-01 76.3% 46.2%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 47.0 4.07e-01 86.4% 77.3%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 3.61e-01 84.7% 82.6%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 52.0 4.16e-01 100.0% 65.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.61 46.0 4.15e-01 83.1% 62.7%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 2.66e-01 79.7% 26.4%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 48.0 3.22e-01 86.4% 79.9%
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.60 43.0 3.11e-01 74.6% 65.7%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.60 41.0 2.85e-01 71.2% 33.8%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 42.0 3.52e-01 93.2% 41.5%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.15e-01 86.4% 72.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 50.0 4.04e-01 98.3% 81.6%
5x7qA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.59 46.0 3.16e-01 86.4% 79.6%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 46.0 4.27e-01 86.4% 93.4%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 2.81e-01 84.7% 29.3%
1fy2A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.58 43.0 2.92e-01 79.7% 100.0%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.58 44.0 3.10e-01 84.7% 84.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.79e-01 83.1% 22.8%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 45.0 4.10e-01 84.7% 75.9%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 42.0 2.63e-01 78.0% 21.2%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 43.0 2.70e-01 81.4% 28.3%
2frxA02 3.10.450.720 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 2.79e-01 91.5% 25.0%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 3.32e-01 94.9% 43.6%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.57 41.0 2.41e-01 76.3% 15.7%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.56 43.0 3.89e-01 83.1% 77.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 40.0 3.81e-01 74.6% 91.3%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.55 44.0 3.24e-01 91.5% 80.1%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 42.0 3.74e-01 83.1% 76.5%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 38.0 3.59e-01 93.2% 62.0%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 41.0 3.67e-01 83.1% 77.6%
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.54 43.0 3.09e-01 89.8% 78.2%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 3.30e-01 96.6% 58.1%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 42.0 3.74e-01 86.4% 77.4%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 2.99e-01 98.3% 98.7%
1qhuA01 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.53 39.0 2.85e-01 81.4% 91.8%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.53 36.0 3.17e-01 72.9% 83.8%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 43.0 2.78e-01 89.8% 48.2%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 36.0 3.04e-01 78.0% 78.5%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.52 40.0 2.78e-01 88.1% 78.0%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 38.0 2.30e-01 78.0% 98.4%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.51 39.0 2.56e-01 84.7% 20.6%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.23e-01 89.8% 90.8%
2yq2A01 2.60.320.20 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › Pestivirus envelope glycoprotein E2, domain A 0.50 40.0 3.65e-01 94.9% 75.0%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 4.08e-01 96.6% 91.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2123017 295.1.1.10 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PnpCD_PnpD_N 0.74 64.0 4.74e-01 100.0% 57.8%
4032337 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.74 61.0 4.46e-01 93.2% 70.3%
3797677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 52.0 3.23e-01 76.3% 92.5%
3218686 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 54.0 4.56e-01 84.7% 97.0%
3617898 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.67 50.0 3.73e-01 79.7% 76.6%
4408605 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.66 53.0 3.76e-01 88.1% 44.4%
185994 6030.1.1.1 a+b two layers › Middle domain of ribosomal protein S2-related protein › Middle domain of ribosomal protein S2-related protein › Middle domain of ribosomal protein S2-related protein › DR2241 0.66 49.0 3.92e-01 79.7% 73.9%
4032478 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 50.0 4.90e-01 83.1% 89.2%
5061645 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.65 42.0 4.15e-01 96.6% 61.9%
3819081 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.65 47.0 2.95e-01 76.3% 94.8%
3436173 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 50.0 3.18e-01 84.7% 22.0%
3218316 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.63 50.0 3.65e-01 84.7% 76.8%
3999577 4099.1.1.28 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.63 48.0 4.29e-01 83.1% 74.1%
3462726 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.63 55.0 4.36e-01 98.3% 56.7%
3934099 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 49.0 4.31e-01 86.4% 72.2%
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 51.0 3.56e-01 89.8% 38.5%
3992641 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.62 44.0 4.22e-01 76.3% 94.3%
3647467 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.61 55.0 4.40e-01 100.0% 58.3%
3220002 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 47.0 3.03e-01 81.4% 20.4%
3293107 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.61 53.0 4.25e-01 98.3% 55.0%
1088604 11.1.1.311 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CueP 0.61 49.0 3.56e-01 88.1% 36.0%
5034412 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.60 50.0 3.54e-01 94.9% 60.1%
4517523 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 43.0 3.61e-01 91.5% 45.0%
3556708 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.59 43.0 4.02e-01 78.0% 89.3%
3976843 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.59 49.0 4.27e-01 91.5% 77.5%
4011464 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.70e-01 79.7% 20.0%
3838921 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 45.0 4.10e-01 83.1% 78.8%
3197429 244.2.1.10 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.58 41.0 2.61e-01 74.6% 71.3%
3709033 5.1.4.391 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CFAP43_N 0.58 47.0 2.96e-01 88.1% 94.3%
4027162 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.58 43.0 2.61e-01 79.7% 22.2%
3260335 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.58 42.0 2.62e-01 78.0% 25.9%
5064558 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 45.0 2.86e-01 91.5% 46.2%
3189736 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 46.0 2.86e-01 88.1% 21.4%
3576508 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.57 48.0 4.49e-01 89.8% 97.1%
3783578 5.1.5.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ANAPC4_WD40 0.57 45.0 2.86e-01 84.7% 92.3%
4675977 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 47.0 4.33e-01 89.8% 92.0%
3781917 5.1.4.332 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.57 50.0 3.15e-01 98.3% 98.4%
1921563 101.1.2.175 alpha arrays › HTH › HTH › winged helix domain › HTH_57 0.57 47.0 3.85e-01 91.5% 52.3%
3232913 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.56 45.0 3.08e-01 84.7% 40.0%
3192398 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 41.0 2.43e-01 79.7% 75.1%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 3.52e-01 94.9% 64.5%
5036420 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.55 45.0 3.04e-01 91.5% 77.5%
3992656 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 41.0 2.75e-01 79.7% 66.5%
5058484 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 43.0 4.10e-01 84.7% 75.7%
5081581 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 43.0 2.87e-01 86.4% 23.5%
4352331 101.1.2.788 alpha arrays › HTH › HTH › winged helix domain › PF29760 0.54 45.0 3.87e-01 89.8% 73.3%
5060936 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 43.0 3.69e-01 84.7% 60.0%
5012894 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 43.0 3.93e-01 88.1% 66.7%
5007802 331.4.1.36 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27851 0.53 38.0 3.50e-01 76.3% 86.3%
4948221 331.1.1.29 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_10 0.53 42.0 3.66e-01 84.7% 80.0%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 42.0 2.90e-01 94.9% 34.4%
4100996 243.6.1.6 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › YebU_pre-PUA_dom 0.52 36.0 3.15e-01 74.6% 61.1%
3698130 216.1.1.14 a+b two layers › UBC-like › UBC-like › UBC-like › Med1 0.51 39.0 3.34e-01 83.1% 84.8%
5054850 3425.2.1.0 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.51 37.0 2.54e-01 83.1% 55.8%