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MZ666938.1__UAJ16923.1__CPT_ProddE_043__00004

Bact-Vir

MZ666938.1__UAJ16923.1__CPT_ProddE_043__00004

Identity

Accession:
MZ666938 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Proddevirus› Desulfovibrio_phage_ProddE

TaxID: 2866661

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-191
PDB
Domain cluster: rep: NC_048075.1__YP_009813367.1__HOU30_gp045__00145__D38-171
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 35.0 4.43e-01 94.7% 91.0%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 29.0 4.11e-01 98.7% 100.0%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 26.0 3.83e-01 100.0% 100.0%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.57 20.0 3.19e-01 85.4% 84.9%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 37.0 4.27e-01 79.5% 95.5%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 35.0 4.00e-01 96.0% 88.6%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 32.0 3.80e-01 94.7% 91.7%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 33.0 3.89e-01 100.0% 94.9%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.52 25.0 3.04e-01 98.7% 68.8%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 36.0 3.70e-01 100.0% 73.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 36.0 3.70e-01 100.0% 73.5%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 4.00e-01 99.3% 85.6%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 26.0 3.43e-01 97.4% 100.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 46.0 4.24e-01 100.0% 89.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3817174 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.60 45.0 4.69e-01 92.1% 83.6%
3577548 331.12.1.0 ↗ a+b two layers › TBP-like › YugN-like › YugN-like 0.59 40.0 4.50e-01 99.3% 92.0%
3930931 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 28.0 3.49e-01 100.0% 74.4%
3246937 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 28.0 3.82e-01 82.8% 95.7%
3317574 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.57 32.0 3.27e-01 79.5% 53.3%
4452393 304.112.1.10 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N 0.56 35.0 4.08e-01 96.0% 88.6%
3767654 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.56 49.0 3.54e-01 97.4% 78.7%
5041901 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 32.0 3.30e-01 77.5% 57.9%
3595489 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 23.0 3.37e-01 92.1% 95.0%
3644913 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.53 28.0 3.59e-01 71.5% 88.2%
3972904 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.52 32.0 3.83e-01 95.4% 92.0%
197096 310.3.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.52 33.0 3.48e-01 100.0% 69.6%
3658323 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.52 32.0 3.74e-01 99.3% 88.6%
3654028 2.1.1.241 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rsm22 0.52 22.0 3.15e-01 89.4% 87.5%
3745492 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.52 45.0 2.80e-01 96.7% 39.2%
3359251 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.52 28.0 3.34e-01 100.0% 77.0%
5022744 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 34.0 3.62e-01 97.4% 74.1%
3439646 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.51 31.0 3.52e-01 98.0% 82.9%
410032 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 39.0 4.08e-01 100.0% 87.7%
3301111 331.3.1.25 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.50 33.0 3.50e-01 86.8% 74.1%