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QYW08119.1

Arc-Vir

MZ666939__QYW08119.1__15570-00022__00022

Identity

Accession:
MZ666939 ↗
Protein ID:
QYW08119.1 ↗
Kingdom:
archaea

Quality

84.6 mean pLDDT

Taxonomy

TaxID: 2866665

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-78
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.76 50.0 5.48e-01 75.6% 85.5%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.73 60.0 5.49e-01 88.5% 95.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.72 44.0 4.79e-01 70.5% 73.8%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 54.0 4.60e-01 83.3% 83.6%
3on2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.69 60.0 4.53e-01 97.4% 75.3%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 51.0 4.30e-01 80.8% 91.5%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.66 47.0 4.65e-01 74.4% 86.4%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.66 54.0 4.75e-01 89.7% 73.7%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.66 53.0 4.26e-01 87.2% 93.4%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 49.0 4.18e-01 82.1% 93.2%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 51.0 3.58e-01 87.2% 67.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 51.0 5.21e-01 85.9% 97.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 49.0 5.08e-01 83.3% 98.6%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.63 52.0 5.26e-01 91.0% 100.0%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.63 45.0 3.85e-01 75.6% 52.3%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.62 43.0 3.68e-01 71.8% 58.9%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.62 50.0 4.35e-01 88.5% 75.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.62 49.0 4.93e-01 85.9% 97.4%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.61 44.0 4.42e-01 75.6% 91.3%
1d2tA00 1.20.144.10 Mainly Alpha › Up-down Bundle › Vanadium-containing Chloroperoxidase; domain 1 › Phosphatidic acid phosphatase type 2/haloperoxidase 0.61 47.0 3.52e-01 87.2% 47.3%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 49.0 4.10e-01 91.0% 92.4%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.60 43.0 3.96e-01 74.4% 87.9%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 43.0 4.25e-01 75.6% 94.0%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.60 52.0 4.86e-01 100.0% 85.9%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 52.0 4.32e-01 97.4% 81.6%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.59 44.0 4.26e-01 92.3% 71.9%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 41.0 3.39e-01 78.2% 39.7%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 49.0 4.31e-01 92.3% 87.2%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.59 50.0 4.82e-01 98.7% 100.0%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 41.0 4.16e-01 74.4% 73.4%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.58 49.0 3.71e-01 96.2% 79.2%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.58 49.0 4.24e-01 98.7% 99.2%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 47.0 4.56e-01 87.2% 92.9%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.57 43.0 4.01e-01 84.6% 89.8%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 47.0 4.38e-01 92.3% 74.0%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.07e-01 79.5% 79.3%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.56 42.0 3.73e-01 80.8% 71.8%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 42.0 3.77e-01 83.3% 73.1%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.56 42.0 4.14e-01 80.8% 75.9%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 43.0 4.41e-01 85.9% 100.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.80e-01 80.8% 68.0%
4atgA00 1.25.40.770 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain 0.54 43.0 3.29e-01 88.5% 53.3%
4mdcD02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 3.77e-01 89.7% 82.1%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 39.0 3.75e-01 80.8% 68.8%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.53 45.0 3.59e-01 93.6% 55.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3744818 101.1.1.213 alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H 0.79 54.0 5.56e-01 79.5% 74.7%
4090469 604.12.1.49 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CrtO 0.78 70.0 5.92e-01 100.0% 96.2%
3390061 5063.1.1.22 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › LIN9_C 0.78 61.0 5.36e-01 82.1% 65.5%
4609494 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.76 66.0 4.83e-01 93.6% 57.9%
3655684 7111.1.1.1 alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap 0.76 61.0 5.02e-01 85.9% 76.3%
4291115 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.72 52.0 5.22e-01 76.9% 91.3%
3347379 3470.1.1.26 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.72 49.0 5.24e-01 70.5% 92.3%
4559675 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.71 63.0 5.56e-01 98.7% 77.9%
3595696 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.70 57.0 4.72e-01 96.2% 51.1%
5068709 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.69 54.0 5.21e-01 85.9% 78.7%
4948444 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 45.0 3.34e-01 80.8% 26.0%
4936976 633.10.1.2 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Bbp7-like 0.67 55.0 4.97e-01 88.5% 88.6%
3392972 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 48.0 3.75e-01 75.6% 45.9%
3698292 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 47.0 3.80e-01 74.4% 40.7%
3256661 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 48.0 3.72e-01 82.1% 36.4%
3699282 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.65 50.0 4.95e-01 83.3% 85.9%
5054723 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.65 52.0 5.13e-01 88.5% 84.5%
3701043 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 49.0 3.69e-01 83.3% 32.8%
3171901 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.64 50.0 4.75e-01 89.7% 70.5%
3938416 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.64 46.0 3.22e-01 74.4% 25.7%
3828878 109.4.1.1260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.62 41.0 3.17e-01 78.2% 29.7%
3200787 5086.1.1.211 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF30554 0.62 44.0 3.06e-01 74.4% 85.9%
3415904 592.1.1.0 alpha arrays › PWI domain-like › PWI domain › PWI domain 0.62 44.0 4.17e-01 80.8% 62.1%
4027736 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.62 46.0 3.50e-01 78.2% 54.4%
3727274 3758.1.1.69 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › PF30554 0.62 44.0 3.09e-01 74.4% 93.6%
4277373 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.61 54.0 5.12e-01 100.0% 100.0%
4975293 601.28.1.1 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › VPS28 0.61 45.0 4.17e-01 79.5% 68.0%
4518433 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.60 45.0 4.32e-01 82.1% 70.0%
4227989 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.60 51.0 4.94e-01 98.7% 93.3%
4270503 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.60 50.0 4.94e-01 93.6% 85.9%
5020701 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.59 44.0 3.09e-01 78.2% 94.0%
3617895 109.4.1.543 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › efThoc1 0.59 51.0 3.34e-01 100.0% 30.8%
3957298 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.59 51.0 4.93e-01 100.0% 94.4%
4975177 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.59 49.0 3.40e-01 94.9% 46.3%
4193935 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.59 49.0 4.81e-01 94.9% 87.1%
4036522 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.58 50.0 4.81e-01 98.7% 90.0%
4358621 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.58 49.0 4.95e-01 98.7% 94.9%
4524825 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.58 48.0 4.52e-01 93.6% 84.2%
3527051 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 50.0 4.75e-01 100.0% 88.4%
4646569 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.57 49.0 4.65e-01 100.0% 98.9%
3470401 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.72e-01 89.7% 69.7%
3729409 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.54 44.0 3.43e-01 88.5% 54.1%
3637653 3755.3.1.481 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554 0.54 41.0 3.21e-01 79.5% 87.7%
4020488 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.54 42.0 3.30e-01 85.9% 70.0%
3379247 109.4.1.309 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med12 0.53 49.0 2.93e-01 100.0% 21.2%
3781427 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 44.0 3.84e-01 93.6% 77.6%
3510805 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 40.0 3.38e-01 84.6% 67.6%
3411226 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.52 41.0 3.04e-01 87.2% 34.5%