←Back to structures

MZ672003.1__UAG58524.1__X__00007

Bact-Vir

MZ672003.1__UAG58524.1__X__00007

Identity

Accession:
MZ672003 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Taxonomy

Lacticaseibacillus_phage_Lphi2ADMT26

TaxID: 2866803

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-151
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.72 57.0 5.84e-01 100.0% 87.7%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 46.0 5.07e-01 100.0% 84.5%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.62 33.0 4.20e-01 75.2% 95.3%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 36.0 4.06e-01 95.9% 79.3%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.59 49.0 4.28e-01 88.4% 93.3%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.93e-01 100.0% 75.0%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 4.27e-01 100.0% 90.6%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 40.0 3.98e-01 71.9% 89.1%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 37.0 3.29e-01 76.0% 46.3%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.56 41.0 4.47e-01 95.9% 94.0%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 41.0 3.87e-01 80.2% 98.0%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 39.0 4.12e-01 76.9% 85.2%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.87e-01 85.1% 99.4%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 43.0 3.51e-01 88.4% 88.5%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.53 39.0 3.60e-01 76.9% 87.7%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.53 37.0 4.12e-01 81.8% 98.9%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 38.0 4.01e-01 76.9% 83.6%
8ab6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 39.0 3.43e-01 100.0% 51.9%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 40.0 3.72e-01 81.8% 98.1%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 30.0 3.53e-01 95.0% 84.0%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 38.0 3.97e-01 76.9% 84.1%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 30.0 3.52e-01 95.0% 83.1%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.51 43.0 3.56e-01 91.7% 76.3%
2ivfC00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 46.0 3.84e-01 100.0% 86.9%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 43.0 3.91e-01 90.1% 73.0%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 37.0 3.89e-01 76.9% 83.2%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.50 36.0 3.66e-01 76.0% 89.6%
5nj5A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.50 37.0 3.03e-01 78.5% 47.5%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.50 37.0 3.00e-01 76.9% 46.5%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 53.0 5.29e-01 95.9% 69.8%
3650579 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.64 48.0 4.58e-01 77.7% 97.1%
2581320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 53.0 5.26e-01 100.0% 86.4%
3220160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 4.74e-01 85.1% 100.0%
4640212 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.61 51.0 3.90e-01 93.4% 61.3%
3937610 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.60 32.0 3.16e-01 76.9% 49.6%
4991389 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.60 50.0 3.94e-01 93.4% 63.0%
3373176 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.60 47.0 4.54e-01 84.3% 97.8%
3921426 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.59 32.0 3.14e-01 76.9% 48.5%
3604240 71.1.1.25 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF6612 0.59 46.0 3.85e-01 81.8% 89.5%
3893043 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.58 51.0 4.41e-01 95.9% 95.1%
3960510 3844.2.1.0 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone 0.58 42.0 3.22e-01 76.0% 49.6%
5033712 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.86e-01 100.0% 69.6%
3849839 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.57 41.0 4.53e-01 76.0% 98.0%
4157506 11.1.1.100 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 0.56 40.0 3.28e-01 100.0% 37.9%
3828729 11.1.1.394 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF568 0.56 46.0 3.92e-01 100.0% 53.2%
901 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.56 46.0 4.02e-01 90.1% 89.4%
3514135 5084.1.1.19 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C 0.55 41.0 3.65e-01 76.9% 86.7%
3971633 5084.6.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.55 43.0 3.51e-01 86.0% 99.2%
3963175 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.54 45.0 3.93e-01 90.1% 85.4%
3692621 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 32.0 3.19e-01 85.1% 55.4%
None — 0.54 43.0 4.51e-01 88.4% 100.0%
3397367 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 41.0 3.72e-01 81.0% 95.2%
5032655 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.07e-01 100.0% 72.5%
3198188 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.53 43.0 3.18e-01 90.9% 82.6%
4931020 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.53 46.0 3.33e-01 95.0% 85.4%
5064686 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.53 44.0 4.30e-01 87.6% 85.3%
5046173 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.52 39.0 3.68e-01 77.7% 94.5%
3901913 11.1.3.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.51 41.0 4.12e-01 84.3% 96.7%
5063914 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.51 38.0 3.22e-01 77.7% 62.5%
4460651 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 39.0 4.02e-01 86.0% 88.2%
358775 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.51 44.0 3.90e-01 90.1% 68.7%
5036930 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 38.0 3.89e-01 86.0% 80.0%
4595711 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 38.0 3.75e-01 86.0% 72.2%
4948088 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 4.07e-01 100.0% 74.3%
4927297 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 38.0 3.88e-01 86.0% 80.0%
3971813 5084.8.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.51 39.0 2.75e-01 81.8% 96.2%
3181778 3385.1.1.1 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.51 39.0 3.74e-01 83.5% 95.9%
3981154 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 36.0 2.52e-01 73.6% 40.5%
4463842 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.50 38.0 3.77e-01 86.0% 76.8%
4932705 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.50 37.0 3.76e-01 86.0% 76.8%
5058146 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.50 37.0 3.73e-01 84.3% 78.3%