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MZ681514.1__UAJ16189.1__SEA_MALIBO_12__00012

Bact-Vir

MZ681514.1__UAJ16189.1__SEA_MALIBO_12__00012

Identity

Accession:
MZ681514 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonia_phage_Malibo

TaxID: 2873531

Cluster

View cluster (241 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-178
PDB
Domain cluster: rep: SRR1747021_scaffold_144_prodigal-single.1__X__X__00059__D46-135_173-256
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 37.0 4.50e-01 96.8% 82.3%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 55.0 5.35e-01 98.4% 80.3%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 61.0 5.75e-01 99.2% 91.3%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 56.0 5.35e-01 99.2% 90.5%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 44.0 4.55e-01 97.6% 82.9%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.56 38.0 4.03e-01 96.0% 77.9%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.55 32.0 3.92e-01 74.6% 90.0%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 23.0 3.25e-01 95.2% 97.8%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 4.26e-01 99.2% 98.9%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 4.23e-01 100.0% 95.2%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 32.0 3.80e-01 94.4% 92.9%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 4.11e-01 98.4% 97.0%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 45.0 3.62e-01 100.0% 84.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943316 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 76.0 6.93e-01 100.0% 85.6%
3964955 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 72.0 6.59e-01 100.0% 100.0%
4514734 1.1.13.42 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.76 56.0 5.93e-01 96.8% 86.4%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.74 63.0 6.08e-01 100.0% 82.1%
2674670 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.74 62.0 5.61e-01 100.0% 66.3%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 67.0 6.29e-01 100.0% 81.9%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.72 62.0 5.98e-01 99.2% 82.1%
2595159 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.72 62.0 5.59e-01 100.0% 69.9%
3502370 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.71 64.0 5.89e-01 100.0% 77.5%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.71 61.0 5.53e-01 100.0% 70.7%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.68 62.0 5.80e-01 99.2% 81.7%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.67 58.0 5.54e-01 100.0% 80.5%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.65 55.0 5.40e-01 91.3% 84.3%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.65 59.0 4.54e-01 98.4% 59.6%
3580020 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 57.0 4.89e-01 96.0% 69.7%
3508173 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.63 37.0 4.15e-01 90.5% 75.8%
3943681 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.62 53.0 5.01e-01 92.1% 80.0%
5081561 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 34.0 4.06e-01 88.9% 85.0%
3802659 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.58 42.0 4.54e-01 100.0% 90.5%
4117439 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 28.0 3.06e-01 97.6% 58.1%
4022169 11.1.1.581 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tag1_C 0.53 42.0 3.86e-01 100.0% 65.6%
4428765 12.3.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › AmyA-gluTrfs_C 0.51 46.0 3.50e-01 100.0% 82.7%
3259730 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.50 32.0 3.39e-01 96.0% 72.7%
D2 medium residues 1-52
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 38.0 2.75e-01 80.8% 30.6%