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MZ681514.1__UAJ16192.1__SEA_MALIBO_15__00015
Bact-VirMZ681514.1__UAJ16192.1__SEA_MALIBO_15__00015
Identity
- Accession:
- MZ681514 ↗
- Kingdom:
- phage
Quality
85.3
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.76 | 46.0 | 3.61e-01 | 81.0% | 30.8% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.72 | 58.0 | 4.99e-01 | 98.3% | 57.5% |
| 1yb1B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 49.0 | 3.18e-01 | 75.9% | 66.0% |
| 4h9nC00 | 1.20.58.2170 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 51.0 | 3.43e-01 | 86.2% | 22.9% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 45.0 | 4.53e-01 | 79.3% | 70.7% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 40.0 | 3.75e-01 | 84.5% | 45.8% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 45.0 | 4.12e-01 | 72.4% | 56.6% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.62 | 53.0 | 4.08e-01 | 100.0% | 60.4% |
| 1q1vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 39.0 | 3.68e-01 | 87.9% | 51.4% |
| 1bvp103 | 1.10.170.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 | 0.61 | 48.0 | 4.15e-01 | 87.9% | 67.7% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.61 | 52.0 | 4.29e-01 | 100.0% | 55.3% |
| 6xpdA01 | 1.20.1510.10 | Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain | 0.60 | 50.0 | 3.34e-01 | 89.7% | 45.5% |
| 3b5iA02 | 1.10.1200.220 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.59 | 48.0 | 4.07e-01 | 89.7% | 87.4% |
| 7x4oB01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 52.0 | 4.15e-01 | 100.0% | 88.3% |
| 4nkwA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 50.0 | 2.97e-01 | 100.0% | 14.0% |
| 1na6B02 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.57 | 42.0 | 2.92e-01 | 86.2% | 21.7% |
| 6aikB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.56 | 44.0 | 2.89e-01 | 93.1% | 89.0% |
| 5b5lA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 43.0 | 3.03e-01 | 89.7% | 87.4% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 39.0 | 3.66e-01 | 79.3% | 74.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.53 | 33.0 | 2.96e-01 | 72.4% | 45.1% |
| 2qkbA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 45.0 | 3.29e-01 | 93.1% | 40.8% |
| 4jxqA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 42.0 | 3.09e-01 | 93.1% | 52.2% |
| 2y7eB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 2.68e-01 | 89.7% | 92.8% |
| 2ns0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.51e-01 | 82.8% | 69.0% |
| 2cufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 42.0 | 3.91e-01 | 93.1% | 73.6% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3923563 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 56.0 | 4.09e-01 | 91.4% | 29.0% |
| 3518992 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.72 | 54.0 | 4.25e-01 | 79.3% | 73.9% |
| 3807825 | 6067.1.1.0 ↗ | alpha arrays › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 › Dimerization domain of Sgt2 | 0.72 | 49.0 | 3.06e-01 | 74.1% | 14.1% |
| 3173183 | 101.1.2.134 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stn1_C | 0.71 | 56.0 | 4.84e-01 | 98.3% | 55.6% |
| 4881130 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.70 | 49.0 | 4.16e-01 | 72.4% | 55.6% |
| 5006721 | 547.1.1.9 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › DUF5658 | 0.67 | 55.0 | 4.30e-01 | 89.7% | 81.7% |
| 4358908 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.67 | 57.0 | 3.92e-01 | 98.3% | 49.5% |
| 4027085 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 52.0 | 5.07e-01 | 84.5% | 87.3% |
| 3973303 | 1049.2.1.3 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 | 0.66 | 54.0 | 4.27e-01 | 93.1% | 44.3% |
| 4416633 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.65 | 49.0 | 4.87e-01 | 79.3% | 76.7% |
| 3732296 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 44.0 | 2.92e-01 | 70.7% | 28.1% |
| 3213193 | 148.1.1.15 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-X | 0.65 | 53.0 | 4.87e-01 | 100.0% | 69.3% |
| 5020701 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.64 | 48.0 | 3.13e-01 | 79.3% | 19.6% |
| 3357520 | 310.2.1.28 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 | 0.63 | 48.0 | 4.33e-01 | 86.2% | 57.6% |
| 3280697 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.63 | 47.0 | 3.05e-01 | 82.8% | 71.4% |
| 5070985 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.62 | 55.0 | 3.60e-01 | 100.0% | 53.3% |
| 3660113 | 3721.1.1.2 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 | 0.62 | 52.0 | 3.73e-01 | 93.1% | 34.5% |
| 4028993 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.62 | 52.0 | 4.28e-01 | 100.0% | 56.5% |
| 4789520 | 3719.1.1.0 ↗ | alpha bundles › Imelysin peptidase-like › Imelysin peptidase-like › Imelysin peptidase-like | 0.62 | 46.0 | 4.49e-01 | 79.3% | 77.8% |
| 5059555 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.61 | 54.0 | 3.29e-01 | 100.0% | 45.6% |
| 3790743 | 109.4.1.1303 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C | 0.60 | 50.0 | 2.95e-01 | 98.3% | 12.8% |
| 4397198 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.60 | 42.0 | 3.99e-01 | 74.1% | 61.4% |
| 4649431 | 3524.1.1.2 ↗ | alpha arrays › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › PF29794 | 0.59 | 47.0 | 4.00e-01 | 87.9% | 58.6% |
| 3635080 | 109.4.1.1651 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_EMC2 | 0.59 | 50.0 | 3.09e-01 | 91.4% | 29.5% |
| 3470564 | 2002.1.1.128 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NAPRTase | 0.59 | 44.0 | 2.91e-01 | 84.5% | 28.0% |
| 4113840 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.59 | 51.0 | 3.49e-01 | 96.6% | 62.6% |
| 5011721 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 46.0 | 4.61e-01 | 84.5% | 86.4% |
| 3267780 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.58 | 49.0 | 3.22e-01 | 100.0% | 23.6% |
| 4013998 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.58 | 50.0 | 4.16e-01 | 94.8% | 64.0% |
| 4246291 | 847.1.1.1 ↗ | a+b complex topology › YopH tyrosine phosphatase N-terminal domain › YopH tyrosine phosphatase N-terminal domain › YopH tyrosine phosphatase N-terminal domain › YopH_N | 0.56 | 42.0 | 3.37e-01 | 82.8% | 96.8% |
| 3819780 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 41.0 | 3.47e-01 | 100.0% | 46.0% |
| 3927049 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.56 | 47.0 | 2.91e-01 | 100.0% | 27.3% |
| 3684768 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 47.0 | 3.12e-01 | 93.1% | 24.0% |
D2
medium
residues 59-108
Domain cluster:
representative
CATH (55)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.90 | 62.0 | 5.25e-01 | 72.0% | 46.2% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.90 | 64.0 | 4.33e-01 | 74.0% | 92.3% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.88 | 62.0 | 4.55e-01 | 74.0% | 90.7% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.87 | 69.0 | 4.94e-01 | 92.0% | 31.2% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.86 | 71.0 | 5.04e-01 | 92.0% | 32.6% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.83 | 58.0 | 4.03e-01 | 74.0% | 91.6% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 67.0 | 6.61e-01 | 88.0% | 84.6% |
| 1r1dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.83 | 73.0 | 4.52e-01 | 100.0% | 19.4% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.81 | 66.0 | 5.46e-01 | 96.0% | 52.4% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.80 | 55.0 | 5.28e-01 | 76.0% | 64.3% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.78 | 61.0 | 4.99e-01 | 84.0% | 48.3% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.78 | 67.0 | 6.13e-01 | 100.0% | 73.5% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.77 | 57.0 | 3.34e-01 | 80.0% | 10.4% |
| 6m36O01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.77 | 65.0 | 5.27e-01 | 96.0% | 87.5% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.75 | 58.0 | 4.82e-01 | 84.0% | 91.9% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.75 | 56.0 | 5.80e-01 | 84.0% | 95.6% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.75 | 48.0 | 3.99e-01 | 70.0% | 38.8% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.75 | 54.0 | 3.78e-01 | 86.0% | 24.2% |
| 1nvpB00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 54.0 | 5.70e-01 | 80.0% | 100.0% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.73 | 57.0 | 4.85e-01 | 86.0% | 51.8% |
| 3vpxB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.72 | 60.0 | 4.11e-01 | 100.0% | 32.7% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.72 | 58.0 | 3.67e-01 | 94.0% | 77.1% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.72 | 49.0 | 4.06e-01 | 72.0% | 43.0% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.70 | 49.0 | 4.64e-01 | 74.0% | 63.3% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.70 | 58.0 | 5.17e-01 | 98.0% | 65.3% |
| 1ynbA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.70 | 60.0 | 4.21e-01 | 100.0% | 32.9% |
| 2ddhA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.69 | 60.0 | 4.47e-01 | 100.0% | 73.5% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 53.0 | 5.41e-01 | 98.0% | 95.7% |
| 2fp1B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.68 | 59.0 | 4.12e-01 | 98.0% | 36.6% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.68 | 59.0 | 3.87e-01 | 100.0% | 24.4% |
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.68 | 56.0 | 3.79e-01 | 100.0% | 29.8% |
| 3bm1A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.68 | 54.0 | 3.73e-01 | 88.0% | 40.7% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.67 | 58.0 | 4.45e-01 | 100.0% | 95.7% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 47.0 | 4.16e-01 | 78.0% | 51.4% |
| 2c5qA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.66 | 50.0 | 3.33e-01 | 86.0% | 89.2% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 53.0 | 3.74e-01 | 100.0% | 25.8% |
| 2h9dD00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.66 | 54.0 | 4.51e-01 | 100.0% | 50.0% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 47.0 | 3.99e-01 | 78.0% | 50.0% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.65 | 47.0 | 4.40e-01 | 78.0% | 66.7% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.62 | 47.0 | 4.05e-01 | 86.0% | 51.2% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 49.0 | 4.00e-01 | 90.0% | 57.7% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.62 | 50.0 | 3.20e-01 | 100.0% | 39.8% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 50.0 | 4.48e-01 | 100.0% | 69.2% |
| 4xr9B02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 50.0 | 3.28e-01 | 90.0% | 61.2% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 51.0 | 3.49e-01 | 100.0% | 94.9% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 48.0 | 4.41e-01 | 100.0% | 66.2% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.60 | 51.0 | 3.48e-01 | 100.0% | 87.1% |
| 3w8hB00 | 1.10.12.70 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.60 | 50.0 | 4.61e-01 | 98.0% | 87.9% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.59 | 46.0 | 3.19e-01 | 90.0% | 23.9% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.59 | 47.0 | 3.79e-01 | 92.0% | 45.3% |
| 3q2eA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 45.0 | 3.64e-01 | 98.0% | 44.9% |
| 2oq1A02 | 1.10.930.10 | Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 | 0.55 | 41.0 | 4.26e-01 | 92.0% | 95.6% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 40.0 | 3.91e-01 | 88.0% | 71.2% |
| 1rajA01 | 4.10.880.10 | Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) | 0.55 | 37.0 | 3.96e-01 | 72.0% | 81.8% |
| 1kf6D00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.54 | 41.0 | 3.39e-01 | 96.0% | 44.5% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949368 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.90 | 60.0 | 5.85e-01 | 70.0% | 63.6% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.87 | 79.0 | 5.45e-01 | 100.0% | 49.7% |
| 4982432 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.86 | 64.0 | 5.58e-01 | 80.0% | 53.3% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.85 | 76.0 | 6.30e-01 | 98.0% | 60.0% |
| 5014612 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.84 | 71.0 | 4.94e-01 | 94.0% | 30.2% |
| 4952257 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.83 | 64.0 | 5.00e-01 | 84.0% | 40.4% |
| 3608275 | 3559.1.1.76 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › PF30328 | 0.83 | 71.0 | 5.16e-01 | 94.0% | 37.7% |
| 3704777 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.83 | 72.0 | 5.04e-01 | 100.0% | 31.9% |
| 4016157 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.81 | 73.0 | 5.27e-01 | 100.0% | 44.4% |
| 3708724 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.79 | 71.0 | 5.30e-01 | 100.0% | 43.3% |
| 3483031 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.79 | 68.0 | 6.35e-01 | 94.0% | 80.0% |
| 4973788 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.79 | 68.0 | 4.94e-01 | 100.0% | 34.5% |
| 5022668 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.78 | 67.0 | 4.88e-01 | 100.0% | 35.0% |
| 4987279 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.78 | 70.0 | 4.18e-01 | 98.0% | 25.0% |
| 5064428 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.78 | 69.0 | 4.50e-01 | 100.0% | 25.2% |
| 3810884 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.78 | 64.0 | 4.58e-01 | 94.0% | 31.7% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.78 | 67.0 | 4.89e-01 | 100.0% | 55.0% |
| 5016694 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.78 | 66.0 | 4.67e-01 | 100.0% | 32.0% |
| 2647290 | 225.1.1.6 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 | 0.77 | 66.0 | 5.70e-01 | 98.0% | 91.3% |
| 4981035 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.77 | 65.0 | 5.98e-01 | 96.0% | 73.8% |
| 3999314 | 5058.1.1.35 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › EMC6 | 0.76 | 63.0 | 5.61e-01 | 96.0% | 65.3% |
| 5047182 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 64.0 | 5.89e-01 | 94.0% | 72.3% |
| 3966348 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.76 | 66.0 | 5.53e-01 | 100.0% | 57.6% |
| 3541370 | 633.6.1.2 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX | 0.76 | 67.0 | 4.42e-01 | 100.0% | 48.3% |
| 4564711 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.74 | 60.0 | 5.31e-01 | 94.0% | 61.3% |
| 4518916 | 4144.1.1.8 ↗ | alpha duplicates or obligate multimers › YejL-like › YejL-like › YejL-like › GlutR_dimer | 0.74 | 60.0 | 5.30e-01 | 94.0% | 61.3% |
| 4267174 | 614.1.1.24 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › GlutR_dimer | 0.73 | 59.0 | 5.21e-01 | 94.0% | 61.3% |
| 3482541 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.73 | 61.0 | 3.84e-01 | 96.0% | 27.8% |
| 3989507 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.73 | 57.0 | 4.40e-01 | 100.0% | 36.8% |
| 4994798 | 3646.1.1.0 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters | 0.72 | 61.0 | 4.12e-01 | 100.0% | 37.0% |
| 3721541 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.72 | 58.0 | 4.75e-01 | 94.0% | 50.0% |
| 3400382 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.72 | 58.0 | 3.66e-01 | 94.0% | 16.8% |
| 4337032 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.72 | 62.0 | 4.60e-01 | 100.0% | 59.4% |
| 5066382 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.72 | 58.0 | 4.81e-01 | 96.0% | 50.0% |
| 3764064 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.71 | 62.0 | 5.22e-01 | 100.0% | 69.4% |
| 4024271 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.71 | 60.0 | 4.48e-01 | 100.0% | 60.7% |
| 4948274 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.70 | 57.0 | 5.02e-01 | 100.0% | 61.3% |
| 3366776 | 109.4.1.1690 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_17, TPR_16 | 0.70 | 58.0 | 3.84e-01 | 96.0% | 25.1% |
| 4055 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.69 | 60.0 | 4.15e-01 | 98.0% | 34.5% |
| 4067677 | 3826.1.1.25 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer | 0.69 | 55.0 | 4.83e-01 | 94.0% | 59.0% |
| 3699443 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 53.0 | 4.07e-01 | 88.0% | 36.5% |
| 3515411 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.68 | 55.0 | 3.74e-01 | 94.0% | 22.9% |
| 5039471 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.68 | 56.0 | 4.74e-01 | 100.0% | 53.3% |
| 366729 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.68 | 56.0 | 4.66e-01 | 100.0% | 53.5% |
| 5071140 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.67 | 60.0 | 4.23e-01 | 100.0% | 62.7% |
| 4296658 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.67 | 58.0 | 4.71e-01 | 100.0% | 50.0% |
| 5060609 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.65 | 52.0 | 4.80e-01 | 100.0% | 74.7% |
| 4979297 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.64 | 52.0 | 3.67e-01 | 100.0% | 29.0% |
| 3987576 | 191.1.1.12 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_8 | 0.63 | 51.0 | 4.09e-01 | 100.0% | 85.2% |
| 2389466 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.63 | 50.0 | 4.42e-01 | 98.0% | 69.4% |
| 4948961 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.61 | 50.0 | 4.34e-01 | 100.0% | 57.6% |
| 3603891 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.61 | 50.0 | 4.25e-01 | 100.0% | 54.3% |
| 4134991 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.59 | 47.0 | 4.00e-01 | 100.0% | 51.0% |
| 4991198 | 2.1.1.359 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HupF_HypC | 0.56 | 43.0 | 3.53e-01 | 94.0% | 42.6% |
| 5079848 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.55 | 45.0 | 4.34e-01 | 100.0% | 98.3% |
| 3283655 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.54 | 42.0 | 4.21e-01 | 92.0% | 90.0% |