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MZ681517.1__UAJ16462.1__SEA_DOLORES_31__00031
Bact-VirMZ681517.1__UAJ16462.1__SEA_DOLORES_31__00031
Identity
- Accession:
- MZ681517 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
TaxID: 2873534
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-83
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hoyA02 | 2.20.28.200 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.61 | 43.0 | 4.71e-01 | 98.4% | 95.9% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.61 | 39.0 | 4.10e-01 | 79.4% | 73.2% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 50.0 | 3.26e-01 | 95.2% | 36.3% |
| 4oxiA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 45.0 | 2.82e-01 | 95.2% | 25.6% |
| 6vhyC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.55 | 43.0 | 2.74e-01 | 90.5% | 59.6% |
| 1m2gA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.53 | 36.0 | 3.22e-01 | 77.8% | 49.5% |
| 6rxpA02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.53 | 34.0 | 3.04e-01 | 95.2% | 43.2% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 39.0 | 2.69e-01 | 98.4% | 23.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 47.0 | 4.96e-01 | 88.9% | 92.7% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 42.0 | 4.75e-01 | 100.0% | 95.6% |
| 3325747 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 42.0 | 4.73e-01 | 74.6% | 97.8% |
| 1246988 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 42.0 | 4.73e-01 | 74.6% | 95.8% |
| 5073226 | 140.1.1.13 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1 | 0.61 | 48.0 | 2.86e-01 | 88.9% | 40.8% |
| 4019144 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 40.0 | 4.57e-01 | 71.4% | 100.0% |
| 4947644 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 41.0 | 4.25e-01 | 92.1% | 78.3% |
| 3871862 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 48.0 | 2.64e-01 | 100.0% | 9.1% |
| 3395661 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 44.0 | 3.01e-01 | 95.2% | 41.1% |
| 3544858 | 922.1.1.7 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS | 0.51 | 43.0 | 3.67e-01 | 100.0% | 80.9% |
D2
high
residues 88-153
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.82 | 48.0 | 3.56e-01 | 100.0% | 25.7% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.76 | 47.0 | 3.51e-01 | 100.0% | 27.7% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.71 | 63.0 | 4.70e-01 | 100.0% | 69.3% |
| 2ocgA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 43.0 | 2.92e-01 | 78.8% | 17.7% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.65 | 51.0 | 4.14e-01 | 100.0% | 44.3% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.65 | 44.0 | 4.21e-01 | 77.3% | 61.3% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 52.0 | 4.79e-01 | 98.5% | 86.0% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.63 | 54.0 | 4.39e-01 | 100.0% | 70.7% |
| 3e74A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.62 | 40.0 | 2.62e-01 | 78.8% | 13.5% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.62 | 47.0 | 4.28e-01 | 84.8% | 73.4% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 42.0 | 4.59e-01 | 81.8% | 97.9% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 37.0 | 3.89e-01 | 98.5% | 65.6% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.60 | 46.0 | 3.71e-01 | 100.0% | 44.5% |
| 3himA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 48.0 | 3.51e-01 | 97.0% | 31.1% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 42.0 | 3.40e-01 | 75.8% | 92.8% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.60 | 41.0 | 4.10e-01 | 71.2% | 92.5% |
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 48.0 | 3.56e-01 | 93.9% | 56.5% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 44.0 | 4.22e-01 | 95.5% | 68.9% |
| 1d5rA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 43.0 | 3.28e-01 | 81.8% | 33.9% |
| 3t8vA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.58 | 41.0 | 2.67e-01 | 75.8% | 17.4% |
| 5ayvA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 48.0 | 3.96e-01 | 95.5% | 68.8% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.57 | 43.0 | 4.22e-01 | 84.8% | 84.9% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.56 | 39.0 | 3.72e-01 | 72.7% | 94.9% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 43.0 | 4.34e-01 | 84.8% | 90.8% |
| 2r7rA08 | 1.20.120.1400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 41.0 | 3.85e-01 | 84.8% | 62.8% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 38.0 | 3.06e-01 | 74.2% | 93.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 37.0 | 3.48e-01 | 72.7% | 81.8% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.53 | 36.0 | 3.58e-01 | 71.2% | 81.9% |
| 1oqyA03 | 1.10.10.540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › XPC-binding domain | 0.53 | 40.0 | 4.22e-01 | 90.9% | 100.0% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.53 | 41.0 | 3.65e-01 | 87.9% | 87.0% |
| 2hxiB02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 41.0 | 3.46e-01 | 95.5% | 92.5% |
| 4f3vB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 44.0 | 2.92e-01 | 97.0% | 23.5% |
| 1wu7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 41.0 | 2.89e-01 | 97.0% | 41.7% |
| 8sbeA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.50 | 43.0 | 3.13e-01 | 100.0% | 79.1% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.50 | 42.0 | 2.87e-01 | 100.0% | 56.3% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033085 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.66 | 54.0 | 3.91e-01 | 95.5% | 38.5% |
| 3365302 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 45.0 | 2.94e-01 | 72.7% | 20.0% |
| None | — | 0.63 | 41.0 | 2.81e-01 | 100.0% | 19.6% | |
| 4982105 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.63 | 40.0 | 3.89e-01 | 98.5% | 57.3% |
| 3414564 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.62 | 53.0 | 3.53e-01 | 98.5% | 57.9% |
| 5045531 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 44.0 | 4.08e-01 | 75.8% | 83.5% |
| 3998718 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.60 | 51.0 | 4.86e-01 | 100.0% | 96.2% |
| 4991554 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.60 | 42.0 | 2.85e-01 | 75.8% | 93.3% |
| 3979656 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.60 | 51.0 | 3.42e-01 | 100.0% | 73.9% |
| 4596871 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.60 | 50.0 | 3.34e-01 | 100.0% | 78.7% |
| 4201591 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.59 | 41.0 | 3.63e-01 | 72.7% | 58.0% |
| 134999 | 191.1.1.26 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24 | 0.58 | 48.0 | 4.02e-01 | 92.4% | 93.1% |
| 4298559 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.58 | 49.0 | 3.26e-01 | 100.0% | 72.9% |
| 3389453 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.58 | 42.0 | 3.43e-01 | 78.8% | 40.8% |
| 4938389 | 101.1.2.951 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29259 | 0.57 | 48.0 | 3.84e-01 | 98.5% | 77.9% |
| 3265850 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.57 | 46.0 | 4.64e-01 | 87.9% | 95.4% |
| 5002559 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.57 | 48.0 | 3.70e-01 | 100.0% | 43.0% |
| 3298392 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.57 | 45.0 | 4.19e-01 | 87.9% | 72.9% |
| 3816226 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.57 | 46.0 | 4.53e-01 | 89.4% | 87.1% |
| 5003639 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.57 | 48.0 | 3.77e-01 | 100.0% | 43.2% |
| 3230835 | 3065.1.1.0 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins | 0.57 | 44.0 | 3.87e-01 | 90.9% | 82.7% |
| 4962676 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.56 | 47.0 | 3.09e-01 | 100.0% | 55.4% |
| 5009771 | 2.21.1.5 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 | 0.56 | 48.0 | 3.65e-01 | 100.0% | 45.9% |
| 5039816 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.56 | 46.0 | 4.11e-01 | 90.9% | 84.2% |
| 3587045 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.56 | 45.0 | 3.02e-01 | 93.9% | 79.7% |
| 4975245 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 39.0 | 3.62e-01 | 74.2% | 87.5% |
| 4934193 | 2.21.1.5 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 | 0.56 | 47.0 | 3.68e-01 | 100.0% | 47.5% |
| 4933155 | 198.1.1.27 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 | 0.55 | 47.0 | 4.38e-01 | 100.0% | 96.5% |
| 4932863 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.55 | 47.0 | 4.48e-01 | 100.0% | 90.0% |
| 3942189 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.55 | 47.0 | 3.08e-01 | 100.0% | 76.5% |
| 5045223 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 47.0 | 4.32e-01 | 100.0% | 85.6% |
| 4945574 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.54 | 47.0 | 3.12e-01 | 100.0% | 74.0% |
| 5066687 | 187.1.1.0 ↗ | alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin | 0.54 | 37.0 | 3.05e-01 | 72.7% | 75.6% |
| 5005176 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.53 | 37.0 | 3.79e-01 | 75.8% | 96.9% |
| 4941262 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 37.0 | 3.35e-01 | 77.3% | 74.8% |
| 4942208 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 39.0 | 3.89e-01 | 80.3% | 98.6% |
| 3179278 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 40.0 | 4.02e-01 | 97.0% | 82.9% |
| 3338910 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 42.0 | 4.18e-01 | 90.9% | 85.7% |
| 150575 | 109.4.1.277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › T7SS_EccA1_N | 0.52 | 46.0 | 3.02e-01 | 97.0% | 26.9% |
| 3380616 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.50 | 38.0 | 3.56e-01 | 86.4% | 64.7% |