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MZ727231.1__UCW44353.1__X__00001

Bact-Vir

MZ727231.1__UCW44353.1__X__00001

Identity

Accession:
MZ727231 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Pseudomonas_phage_PPAY

TaxID: 2871159

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 58.0 3.97e-01 100.0% 48.8%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.68 57.0 4.77e-01 94.4% 82.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.95e-01 90.7% 87.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.91e-01 90.7% 89.4%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 49.0 4.72e-01 85.2% 100.0%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.64 48.0 4.65e-01 85.2% 96.9%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 49.0 3.87e-01 100.0% 39.2%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 50.0 4.60e-01 90.7% 100.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 54.0 4.43e-01 100.0% 90.4%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 48.0 4.41e-01 85.2% 87.5%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 3.81e-01 88.9% 53.8%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 50.0 4.06e-01 100.0% 69.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 4.48e-01 94.4% 80.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 50.0 4.19e-01 100.0% 87.1%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.24e-01 92.6% 77.2%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.45e-01 81.5% 68.9%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 49.0 4.28e-01 100.0% 73.9%
3jxvA02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 47.0 3.76e-01 94.4% 89.3%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 45.0 3.33e-01 87.0% 45.3%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 47.0 3.45e-01 100.0% 91.5%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 49.0 4.44e-01 100.0% 100.0%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.58 48.0 3.07e-01 100.0% 33.9%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 47.0 4.05e-01 100.0% 92.7%
3no0A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.57 46.0 3.01e-01 96.3% 25.0%
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 47.0 3.69e-01 100.0% 60.0%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.36e-01 100.0% 50.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.78e-01 92.6% 75.5%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 3.83e-01 100.0% 55.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 47.0 4.58e-01 100.0% 98.4%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.25e-01 92.6% 84.8%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.84e-01 96.3% 80.2%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.56 45.0 3.88e-01 92.6% 55.6%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.98e-01 96.3% 74.4%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.61e-01 100.0% 55.9%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.55 40.0 3.57e-01 79.6% 53.8%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.45e-01 100.0% 52.6%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.37e-01 100.0% 50.6%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.55 42.0 3.60e-01 92.6% 82.7%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.31e-01 100.0% 78.1%
4w6yA00 2.60.120.1210 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.36e-01 100.0% 52.7%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.51e-01 100.0% 70.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.31e-01 85.2% 58.3%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.86e-01 100.0% 78.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.77e-01 100.0% 75.0%
2qejD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 42.0 3.50e-01 100.0% 80.5%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.44e-01 100.0% 65.2%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 41.0 2.95e-01 98.1% 72.9%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 41.0 3.45e-01 100.0% 77.4%
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 44.0 3.44e-01 100.0% 61.8%
3ss3C02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 2.51e-01 88.9% 23.5%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 40.0 3.37e-01 100.0% 78.6%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.30e-01 81.5% 98.6%
1aw7A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 40.0 3.30e-01 100.0% 74.8%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 41.0 3.40e-01 96.3% 50.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.64e-01 87.0% 81.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 61.0 5.34e-01 100.0% 85.0%
3972307 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.68 55.0 5.40e-01 90.7% 90.0%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 3.91e-01 88.9% 34.8%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.53e-01 88.9% 82.2%
5036655 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 43.0 4.24e-01 79.6% 61.7%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.64 55.0 5.07e-01 94.4% 95.7%
4083044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 55.0 5.03e-01 100.0% 93.3%
3904189 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 55.0 4.58e-01 100.0% 70.0%
4011239 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.90e-01 100.0% 87.5%
3943690 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 52.0 5.13e-01 92.6% 96.6%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.92e-01 90.7% 98.5%
3970893 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 53.0 5.14e-01 92.6% 91.7%
3999000 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.64 53.0 4.69e-01 100.0% 72.9%
3973332 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 4.94e-01 100.0% 88.0%
5000971 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 4.70e-01 100.0% 95.6%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 5.02e-01 100.0% 92.9%
3240098 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 54.0 4.50e-01 100.0% 91.9%
4166012 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 54.0 4.90e-01 100.0% 93.3%
5083849 4027.1.1.2 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › TOP6A-Spo11_Toprim 0.62 50.0 5.19e-01 90.7% 94.0%
4023481 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 52.0 3.83e-01 100.0% 88.7%
3190308 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 52.0 3.74e-01 100.0% 85.9%
4350337 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 52.0 4.77e-01 100.0% 96.0%
3507461 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.55e-01 83.3% 94.5%
4024940 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 3.68e-01 100.0% 87.1%
3224349 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 49.0 4.25e-01 100.0% 68.4%
3256943 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.05e-01 92.6% 88.4%
3891360 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.59 49.0 4.05e-01 100.0% 67.3%
3917191 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.35e-01 81.5% 92.7%
3285910 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.58 49.0 3.71e-01 100.0% 55.9%
2321850 11.1.1.245 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_6 0.58 45.0 4.08e-01 90.7% 74.1%
5081809 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 47.0 4.47e-01 94.4% 96.9%
5005784 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 3.85e-01 94.4% 77.3%
4020238 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.58 47.0 3.59e-01 100.0% 88.0%
3990561 11.1.1.955 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.57 49.0 4.00e-01 100.0% 83.8%
5026836 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 42.0 3.97e-01 83.3% 67.1%
3960756 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.57 45.0 2.81e-01 90.7% 16.7%
4602375 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.57 46.0 2.93e-01 100.0% 84.9%
3273362 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.03e-01 94.4% 78.8%
1117738 10.32.1.52 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.57 48.0 3.39e-01 100.0% 50.5%
2793480 11.1.1.245 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_6 0.56 45.0 3.98e-01 92.6% 73.8%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.56 42.0 4.05e-01 85.2% 80.0%
3728236 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.56 45.0 3.00e-01 100.0% 46.3%
5049002 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.95e-01 100.0% 70.5%
2716345 1.4.1.1 ↗ beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 0.55 46.0 3.44e-01 100.0% 73.0%
3900452 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.55 45.0 3.98e-01 96.3% 80.0%
961561 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.55 43.0 3.61e-01 92.6% 83.5%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 41.0 3.81e-01 83.3% 77.1%
5011002 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.54 44.0 3.60e-01 100.0% 70.8%
3737433 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.54 44.0 2.98e-01 100.0% 43.1%
3395045 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 42.0 3.25e-01 94.4% 48.0%
3909007 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.60e-01 98.1% 80.0%
3820956 10.4.1.13 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › WAK 0.53 43.0 3.11e-01 100.0% 62.1%
3619202 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.53 41.0 3.68e-01 90.7% 68.2%
3242725 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.53 41.0 3.38e-01 90.7% 60.9%
4977038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.60e-01 96.3% 68.0%
3257396 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.68e-01 96.3% 83.3%
152594 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.52 41.0 3.47e-01 100.0% 83.3%
5010546 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.51 45.0 3.57e-01 100.0% 60.9%
3905386 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.66e-01 90.7% 72.9%
3528768 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 39.0 3.49e-01 96.3% 78.9%