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MZ747517.1__UAW08942.1__SEA_LUCIVIA_72__00071
Bact-VirMZ747517.1__UAW08942.1__SEA_LUCIVIA_72__00071
Identity
- Accession:
- MZ747517 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Taxonomy
TaxID: 2867476
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-109
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.71 | 62.0 | 4.81e-01 | 96.8% | 86.1% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.70 | 56.0 | 3.63e-01 | 85.7% | 31.9% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.69 | 48.0 | 4.44e-01 | 73.0% | 59.5% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.68 | 58.0 | 4.10e-01 | 100.0% | 89.9% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.65 | 49.0 | 3.74e-01 | 82.5% | 36.6% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.64 | 43.0 | 4.29e-01 | 92.1% | 68.8% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.63 | 55.0 | 3.48e-01 | 95.2% | 55.0% |
| 2hlyA00 | 3.10.550.10 | Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 | 0.63 | 43.0 | 2.97e-01 | 71.4% | 81.0% |
| 6ks6Z01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.58 | 47.0 | 3.18e-01 | 93.7% | 58.4% |
| 4nzrM01 | 3.30.1370.200 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.57 | 37.0 | 3.35e-01 | 100.0% | 50.0% |
| 3ocjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 3.12e-01 | 100.0% | 55.0% |
| 2reoA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 46.0 | 3.33e-01 | 100.0% | 85.5% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 45.0 | 2.86e-01 | 98.4% | 27.7% |
| 1dp7P00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.52e-01 | 92.1% | 59.2% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.53 | 47.0 | 3.73e-01 | 100.0% | 80.5% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 31.0 | 2.55e-01 | 92.1% | 29.7% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 45.0 | 3.09e-01 | 98.4% | 34.3% |
| 3kbgA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.52 | 31.0 | 2.91e-01 | 92.1% | 44.4% |
| 1fthA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 35.0 | 2.97e-01 | 88.9% | 38.5% |
| 2mj6A00 | 3.30.450.250 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 42.0 | 3.79e-01 | 93.7% | 87.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3703706 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.80 | 60.0 | 4.02e-01 | 88.9% | 24.5% |
| 3966542 | 2486.1.1.0 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase | 0.76 | 58.0 | 3.79e-01 | 82.5% | 77.2% |
| 4000709 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.74 | 55.0 | 5.32e-01 | 90.5% | 71.4% |
| 3509156 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.72 | 56.0 | 5.41e-01 | 90.5% | 74.3% |
| 3608317 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.71 | 53.0 | 4.88e-01 | 79.4% | 63.7% |
| 4963254 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.71 | 62.0 | 4.24e-01 | 100.0% | 79.6% |
| 3583711 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.71 | 54.0 | 4.22e-01 | 82.5% | 50.4% |
| 3544646 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.69 | 54.0 | 5.29e-01 | 93.7% | 77.1% |
| 4514462 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.67 | 54.0 | 4.58e-01 | 87.3% | 67.0% |
| 4015066 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 58.0 | 3.34e-01 | 100.0% | 24.0% |
| 4935614 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.66 | 48.0 | 3.38e-01 | 100.0% | 24.5% |
| 4387003 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.65 | 47.0 | 3.15e-01 | 77.8% | 18.8% |
| 3956498 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 46.0 | 2.99e-01 | 77.8% | 15.2% |
| 5056085 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.65 | 48.0 | 3.35e-01 | 93.7% | 24.4% |
| 3933947 | 5001.1.1.206 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg, 7TM_GPCR_Srv | 0.65 | 52.0 | 3.05e-01 | 87.3% | 16.8% |
| 3599852 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.63 | 56.0 | 3.20e-01 | 100.0% | 63.9% |
| 3708183 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.62 | 39.0 | 3.03e-01 | 93.7% | 32.0% |
| 3457593 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.61 | 45.0 | 3.90e-01 | 85.7% | 50.0% |
| 5074335 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.60 | 53.0 | 4.43e-01 | 98.4% | 85.3% |
| 4874201 | 11.40.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly | 0.59 | 45.0 | 2.95e-01 | 82.5% | 85.0% |
| 1674247 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.57 | 42.0 | 3.29e-01 | 82.5% | 36.8% |
| 3831895 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.57 | 47.0 | 3.07e-01 | 93.7% | 21.1% |
| 3422531 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.57 | 31.0 | 2.96e-01 | 96.8% | 42.7% |
| 3923219 | 5001.1.1.44 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv | 0.57 | 48.0 | 3.00e-01 | 100.0% | 18.1% |
| 4872787 | 5093.1.1.1 ↗ | a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Fusion_gly | 0.56 | 45.0 | 3.12e-01 | 96.8% | 40.3% |
| 4988544 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.55 | 44.0 | 3.09e-01 | 100.0% | 25.5% |
| 4888124 | 325.1.4.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like | 0.55 | 43.0 | 3.26e-01 | 87.3% | 67.7% |
| 4012878 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 3.16e-01 | 92.1% | 39.1% |
| 3729476 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.54 | 37.0 | 3.13e-01 | 92.1% | 39.1% |
| 3979431 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 38.0 | 2.87e-01 | 100.0% | 31.3% |
| 3718219 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.54 | 42.0 | 3.06e-01 | 88.9% | 62.6% |
| 3528137 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.53 | 45.0 | 3.21e-01 | 93.7% | 47.9% |
| 3938493 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.53 | 46.0 | 4.13e-01 | 98.4% | 86.7% |
| 3590896 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 44.0 | 2.82e-01 | 96.8% | 20.9% |
| 1873725 | 230.4.1.1 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE | 0.52 | 42.0 | 3.14e-01 | 96.8% | 87.9% |
| 3519313 | 101.1.2.284 ↗ | alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd | 0.52 | 35.0 | 3.11e-01 | 87.3% | 46.3% |
| 3733126 | 70.3.1.11 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND | 0.52 | 43.0 | 2.78e-01 | 92.1% | 42.0% |
| 3058078 | 3756.1.1.1 ↗ | a+b complex topology › Diiron beta-hydroxylase CmlA N-terminal domain › Diiron beta-hydroxylase CmlA N-terminal domain › Diiron beta-hydroxylase CmlA N-terminal domain › CmlA_N | 0.52 | 38.0 | 2.67e-01 | 82.5% | 37.2% |
| 5060418 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 45.0 | 3.70e-01 | 100.0% | 84.2% |
| 4655040 | 140.1.1.4 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 | 0.50 | 42.0 | 3.00e-01 | 100.0% | 61.9% |