←Back to structures

MZ773648.1__UAT28878.1__R7L_gp39__00039

Bact-Vir

MZ773648.1__UAT28878.1__R7L_gp39__00039

Identity

Accession:
MZ773648 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Gonggongvirus› Dinoroseobacter_phage_vB_DshP-R7L

TaxID: 2873349

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-78
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.72 44.0 4.95e-01 72.2% 81.8%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.70 47.0 4.09e-01 70.8% 97.3%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.60 47.0 3.78e-01 86.1% 52.1%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 38.0 3.52e-01 70.8% 50.5%
5anpA00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.58 44.0 3.56e-01 83.3% 69.7%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 41.0 3.02e-01 77.8% 45.9%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.55 39.0 3.20e-01 75.0% 55.3%
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 39.0 2.91e-01 76.4% 52.5%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 36.0 3.36e-01 70.8% 52.6%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.53 36.0 2.76e-01 70.8% 97.1%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 34.0 2.91e-01 70.8% 40.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.73 45.0 5.00e-01 72.2% 80.4%
4927354 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.66 50.0 4.44e-01 81.9% 67.3%
3539914 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.65 51.0 3.79e-01 84.7% 50.3%
3391363 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.63 49.0 3.76e-01 86.1% 68.3%
4930189 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 42.0 4.47e-01 70.8% 91.7%
3890372 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 42.0 3.67e-01 70.8% 47.3%
4991801 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.61 46.0 3.91e-01 83.3% 56.8%
3989854 3761.1.1.4 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.60 49.0 4.61e-01 86.1% 85.9%
3408206 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.60 53.0 4.10e-01 100.0% 59.4%
4934330 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.59 45.0 3.52e-01 84.7% 60.6%
3393851 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.59 52.0 4.19e-01 100.0% 58.6%
1384885 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 38.0 3.61e-01 70.8% 54.5%
3935342 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 39.0 3.36e-01 70.8% 42.6%
4547659 2007.1.16.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.58 40.0 3.33e-01 84.7% 40.0%
5079673 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 41.0 2.87e-01 75.0% 83.0%
3514344 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 40.0 3.48e-01 73.6% 47.0%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.56 49.0 3.37e-01 100.0% 32.1%
4932660 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.54 47.0 3.46e-01 100.0% 36.1%
3798324 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 37.0 3.01e-01 72.2% 36.4%
3274180 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 36.0 3.17e-01 70.8% 45.5%
1266130 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.53 38.0 2.64e-01 76.4% 66.4%
3916025 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.51 36.0 2.97e-01 75.0% 40.7%
3510346 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 37.0 3.21e-01 81.9% 82.3%
3190124 5.1.4.411 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF2415 0.50 42.0 2.65e-01 100.0% 23.1%
3947030 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.50 37.0 2.44e-01 83.3% 54.2%
D2 high residues 389-475
PDB
D3 high residues 578-674
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
D4 medium residues 515-574
PDB