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MZ779063.1__UAJ17078.1__UFVDC4_00151__00150

Bact-Vir

MZ779063.1__UAJ17078.1__UFVDC4_00151__00150

Identity

Accession:
MZ779063 ↗
Kingdom:
phage

Quality

57.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_vB_SauM-UFV_DC4

TaxID: 2873946

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-77
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 52.0 5.95e-01 82.9% 96.0%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 50.0 4.91e-01 88.6% 63.2%
6dnwA01 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.75 64.0 5.27e-01 92.9% 65.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 50.0 5.50e-01 100.0% 85.7%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 49.0 5.07e-01 88.6% 71.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 48.0 4.65e-01 70.0% 61.5%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.71 50.0 4.49e-01 87.1% 53.6%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 46.0 3.52e-01 84.3% 31.1%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.75e-01 90.0% 76.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.85e-01 100.0% 76.4%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.17e-01 100.0% 84.9%
4e12A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 50.0 4.72e-01 88.6% 79.3%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.62 42.0 3.84e-01 70.0% 70.2%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 48.0 3.97e-01 87.1% 85.6%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.93e-01 100.0% 81.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.36e-01 100.0% 65.2%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.60 41.0 3.69e-01 71.4% 70.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.58e-01 100.0% 65.7%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.59 47.0 4.46e-01 85.7% 74.4%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.71e-01 98.6% 82.4%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.57 44.0 4.20e-01 82.9% 85.2%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 40.0 3.02e-01 75.7% 78.7%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 44.0 3.69e-01 90.0% 88.5%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.24e-01 100.0% 73.6%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 45.0 4.44e-01 95.7% 85.9%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 40.0 4.15e-01 91.4% 96.7%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 36.0 3.57e-01 70.0% 93.3%
4ixjA02 3.30.1690.20 Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › 0.52 40.0 3.26e-01 87.1% 81.6%
4q6bA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 42.0 3.08e-01 92.9% 81.6%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 39.0 2.88e-01 84.3% 42.5%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980764 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.92 58.0 7.13e-01 84.3% 100.0%
3958338 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.91 55.0 6.75e-01 81.4% 95.6%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.91 58.0 6.27e-01 85.7% 76.7%
4978898 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.91 57.0 7.05e-01 80.0% 100.0%
3740014 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.90 59.0 5.91e-01 82.9% 67.1%
4014657 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 57.0 6.43e-01 84.3% 83.6%
4959187 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.89 57.0 6.69e-01 85.7% 92.0%
5049604 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 58.0 6.48e-01 85.7% 85.5%
3589089 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.87 58.0 4.97e-01 88.6% 45.7%
5027952 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.86 56.0 6.28e-01 84.3% 85.5%
5079851 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.86 58.0 6.30e-01 82.9% 81.7%
5028095 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.85 55.0 4.76e-01 84.3% 44.8%
5029224 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 55.0 5.91e-01 84.3% 78.3%
3962597 101.1.3.13 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.84 57.0 5.91e-01 84.3% 75.4%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.84 57.0 6.56e-01 87.1% 98.0%
3957316 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.83 56.0 5.86e-01 84.3% 75.4%
4926838 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.83 58.0 6.00e-01 84.3% 76.9%
3910504 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 56.0 6.44e-01 90.0% 98.0%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.83 61.0 6.78e-01 98.6% 98.2%
3636036 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 57.0 6.14e-01 81.4% 83.3%
2393452 101.43.1.1 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.82 56.0 6.15e-01 81.4% 87.5%
4927588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 59.0 5.74e-01 74.3% 76.0%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 52.0 5.98e-01 87.1% 92.0%
3723123 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 58.0 6.22e-01 75.7% 88.3%
4501343 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.79 52.0 5.89e-01 80.0% 87.3%
4014609 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.79 57.0 5.92e-01 75.7% 83.1%
5049118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 58.0 6.02e-01 77.1% 83.1%
4958195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 52.0 5.79e-01 84.3% 87.3%
3661501 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.78 58.0 5.54e-01 78.6% 95.0%
3987909 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.78 53.0 4.20e-01 75.7% 36.3%
5052263 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 55.0 5.45e-01 88.6% 70.7%
3597185 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 57.0 5.29e-01 78.6% 77.3%
4929815 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 55.0 5.67e-01 74.3% 87.7%
2332937 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 50.0 4.96e-01 88.6% 64.9%
3620979 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 52.0 5.74e-01 84.3% 90.9%
4974452 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.75 53.0 5.84e-01 74.3% 94.5%
3618803 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 50.0 5.39e-01 71.4% 85.0%
4989784 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.72 49.0 3.87e-01 70.0% 67.1%
3234027 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.72 49.0 5.27e-01 82.9% 83.3%
5070167 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 50.0 5.58e-01 90.0% 92.7%
3584520 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 4.70e-01 81.4% 66.4%
3962579 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 58.0 4.51e-01 85.7% 57.9%
5006610 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 5.14e-01 87.1% 81.7%
4977905 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.72e-01 100.0% 85.7%
4978899 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.14e-01 84.3% 90.0%
3740038 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.69 47.0 5.46e-01 91.4% 100.0%
3715279 101.1.1.276 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-bind_6 0.69 55.0 3.96e-01 84.3% 42.2%
3617137 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 51.0 5.61e-01 84.3% 100.0%
3609939 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.68 54.0 4.68e-01 84.3% 71.4%
3712226 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.68 54.0 4.85e-01 84.3% 80.0%
3720299 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.20e-01 95.7% 72.2%
3597198 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 60.0 5.34e-01 95.7% 76.8%
4105352 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.66 61.0 4.02e-01 100.0% 97.8%
3450729 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 50.0 5.07e-01 85.7% 81.4%
5079440 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 62.0 4.34e-01 100.0% 91.8%
3506369 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.66 61.0 3.89e-01 100.0% 87.5%
3590178 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.65 60.0 3.90e-01 100.0% 94.1%
3961415 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.65 60.0 3.85e-01 100.0% 88.5%
4958468 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 45.0 4.84e-01 94.3% 85.0%
4929599 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.65 60.0 4.04e-01 100.0% 82.9%
5030453 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.64 59.0 3.99e-01 100.0% 82.6%
4989829 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.64 50.0 4.93e-01 100.0% 80.0%
3739094 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 5.12e-01 100.0% 92.3%
3958076 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 49.0 3.20e-01 84.3% 44.1%
5070882 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.63 48.0 4.10e-01 81.4% 82.7%
5027917 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.62 57.0 3.87e-01 100.0% 82.1%
5029518 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.62 48.0 3.86e-01 82.9% 68.1%
3228613 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 51.0 4.53e-01 94.3% 88.6%
5057164 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.77e-01 100.0% 67.0%
5041315 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 52.0 4.69e-01 100.0% 69.0%
4937841 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.60 45.0 3.68e-01 82.9% 68.1%
5077022 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 53.0 4.70e-01 100.0% 70.0%
4001420 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 47.0 4.73e-01 95.7% 85.7%
4971686 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 52.0 4.57e-01 100.0% 66.7%
4943320 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 52.0 4.36e-01 100.0% 58.3%
4229465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.46e-01 95.7% 78.8%
5028427 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 50.0 4.39e-01 100.0% 65.7%
3561932 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.56 45.0 4.32e-01 95.7% 76.5%
5004303 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.55 46.0 3.82e-01 100.0% 71.4%
5065249 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.28e-01 95.7% 76.5%
5059463 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.55 48.0 4.01e-01 100.0% 75.2%
4928247 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 37.0 2.60e-01 77.1% 58.1%
D2 high residues 88-191
PDB