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MZ820085.1__QZE10406.1__SEA_SCOOBYDOOBYDOO_55__00055

Bact-Vir

MZ820085.1__QZE10406.1__SEA_SCOOBYDOOBYDOO_55__00055

Identity

Accession:
MZ820085 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13384.13 best HTH_23 29.7 5.90e-07 56.5% 56.0%
PF06056.19 Terminase_5 23.5 5.90e-05 50.0% 44.8%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 58.0 5.23e-01 83.9% 53.8%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 56.0 5.54e-01 74.2% 64.6%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 56.0 5.46e-01 77.4% 62.7%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 51.0 5.64e-01 72.6% 77.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 55.0 5.80e-01 71.0% 75.0%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.83 56.0 3.75e-01 79.0% 20.9%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 56.0 5.18e-01 79.0% 56.6%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 53.0 5.45e-01 79.0% 69.0%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 55.0 5.16e-01 79.0% 57.3%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 55.0 5.25e-01 79.0% 59.7%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 52.0 5.21e-01 74.2% 63.5%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 58.0 5.53e-01 90.3% 64.3%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 52.0 5.36e-01 79.0% 68.3%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 53.0 5.70e-01 74.2% 77.8%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 57.0 5.77e-01 79.0% 73.8%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 57.0 6.08e-01 74.2% 85.5%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.80 55.0 4.13e-01 79.0% 31.2%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 5.14e-01 75.8% 61.1%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 51.0 4.55e-01 75.8% 47.7%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 52.0 5.16e-01 85.5% 65.2%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 5.77e-01 85.5% 76.2%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 5.39e-01 79.0% 70.3%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 52.0 4.61e-01 83.9% 49.4%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 4.92e-01 79.0% 56.2%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 54.0 4.07e-01 72.6% 34.3%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.30e-01 71.0% 74.2%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.15e-01 77.4% 67.2%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 5.55e-01 79.0% 80.0%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 51.0 5.58e-01 80.6% 86.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 4.08e-01 75.8% 51.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 56.0 4.71e-01 79.0% 52.4%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.75 63.0 4.83e-01 88.7% 54.8%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.63e-01 74.2% 57.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.56e-01 83.9% 55.0%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 3.86e-01 79.0% 33.8%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 3.72e-01 71.0% 35.7%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.72 51.0 3.76e-01 74.2% 54.8%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 3.83e-01 74.2% 33.8%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 3.63e-01 82.3% 29.8%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 48.0 4.67e-01 77.4% 64.3%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 49.0 4.85e-01 82.3% 70.8%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.01e-01 80.6% 40.0%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.26e-01 100.0% 72.8%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.04e-01 75.8% 89.5%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.81e-01 95.2% 64.5%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 42.0 4.18e-01 79.0% 63.5%
2k9qA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 38.0 4.59e-01 79.0% 92.5%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.62 55.0 4.69e-01 98.4% 76.2%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.63e-01 95.2% 70.1%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.59 49.0 4.03e-01 100.0% 87.0%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 3.90e-01 98.4% 70.9%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 47.0 3.34e-01 95.2% 46.3%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.45e-01 91.9% 78.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.62e-01 96.8% 76.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078377 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.98 60.0 6.73e-01 72.6% 78.0%
3979166 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.91 59.0 5.59e-01 77.4% 58.6%
3590541 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.90 58.0 3.99e-01 79.0% 22.8%
3947091 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.90 56.0 5.77e-01 79.0% 66.7%
3943462 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 56.0 5.96e-01 72.6% 72.7%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.88 59.0 5.22e-01 83.9% 50.6%
2440126 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.87 57.0 5.14e-01 83.9% 51.2%
5070354 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.87 61.0 5.53e-01 72.6% 58.7%
3287232 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 58.0 5.42e-01 71.0% 60.0%
5061884 101.1.2.887 alpha arrays › HTH › HTH › winged helix domain › DUF1670 0.84 65.0 4.68e-01 82.3% 40.0%
3590401 375.1.1.90 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.84 57.0 4.24e-01 71.0% 33.8%
4031535 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.83 53.0 5.45e-01 77.4% 68.3%
4956784 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.82 53.0 5.09e-01 74.2% 58.6%
4139052 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 55.0 5.15e-01 79.0% 57.3%
1177545 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 57.0 5.53e-01 90.3% 66.2%
4927516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 61.0 6.26e-01 96.8% 81.7%
4004247 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 52.0 4.79e-01 79.0% 51.2%
3288236 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.81 54.0 4.74e-01 79.0% 47.8%
1159643 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.81 57.0 5.47e-01 74.2% 66.2%
5020331 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 56.0 5.58e-01 72.6% 69.2%
5077607 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.80 53.0 5.38e-01 77.4% 70.0%
4926890 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.80 56.0 4.86e-01 82.3% 50.0%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.80 58.0 6.13e-01 75.8% 89.1%
3587644 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.79 56.0 5.76e-01 74.2% 78.3%
4928836 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.79 54.0 5.18e-01 77.4% 62.9%
3944331 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.79 59.0 5.38e-01 96.8% 61.3%
5052144 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 57.0 5.98e-01 83.9% 87.3%
4642479 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.78 56.0 4.79e-01 79.0% 49.5%
3289370 101.1.1.300 alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.77 54.0 4.61e-01 79.0% 46.0%
4996857 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 56.0 5.76e-01 83.9% 81.4%
3976506 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.77 52.0 4.91e-01 79.0% 58.7%
3283604 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.76 54.0 4.58e-01 80.6% 46.0%
4282037 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.76 55.0 4.88e-01 79.0% 53.3%
3927372 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 5.18e-01 83.9% 61.3%
3997733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 5.50e-01 82.3% 73.8%
3955106 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.76 55.0 4.86e-01 79.0% 53.3%
5060354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 49.0 4.90e-01 75.8% 64.6%
3786128 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.01e-01 83.9% 60.0%
5047836 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 54.0 5.09e-01 85.5% 64.0%
3933546 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.74 52.0 4.89e-01 79.0% 61.3%
3959391 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 53.0 5.14e-01 83.9% 68.6%
3295746 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.72 54.0 5.06e-01 79.0% 66.7%
3952144 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 54.0 5.36e-01 96.8% 78.5%
4979451 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.48e-01 96.8% 80.0%
4980944 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 49.0 4.49e-01 77.4% 56.2%
3578615 101.1.1.302 alpha arrays › HTH › HTH › Three-helical HTH › FAM91_N 0.70 58.0 4.75e-01 91.9% 86.1%
4024558 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.70 51.0 3.95e-01 79.0% 38.6%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 62.0 3.93e-01 100.0% 61.7%
5009656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 4.63e-01 83.9% 67.7%
5004841 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.43e-01 87.1% 92.3%
4939690 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.67 58.0 4.90e-01 93.5% 89.0%
3982095 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 44.0 3.94e-01 88.7% 68.4%
D2 high residues 75-129
PDB