←Back to structures

MZ820085.1__QZE10452.1__SEA_SCOOBYDOOBYDOO_106__00101

Bact-Vir

MZ820085.1__QZE10452.1__SEA_SCOOBYDOOBYDOO_106__00101

Identity

Accession:
MZ820085 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_ScoobyDoobyDoo

TaxID: 2871542

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-212
PDB
Domain cluster: rep: MW824397.1__QZI91684.1__PODOV088v1_p0023__00023__D41-137
D2 high residues 428-507
PDB
D3 high residues 517-623
PDB
Domain cluster: rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.79 64.0 6.89e-01 100.0% 100.0%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 59.0 6.26e-01 98.1% 98.9%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 59.0 5.86e-01 100.0% 88.1%
3g5wA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.63 48.0 4.15e-01 79.4% 69.9%
2wnoA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.62 46.0 4.52e-01 76.6% 92.9%
4f7kA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 46.0 4.50e-01 78.5% 71.9%
4knuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 46.0 4.00e-01 78.5% 74.8%
6xizA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 48.0 4.21e-01 85.0% 65.2%
6evgA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.59 44.0 3.97e-01 78.5% 75.3%
1pf3A03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 43.0 3.89e-01 78.5% 85.9%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 44.0 3.43e-01 85.0% 62.7%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.97e-01 90.7% 86.1%
3mxnA01 2.40.50.510 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 37.0 4.21e-01 86.0% 91.3%
3wi9A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 47.0 3.41e-01 92.5% 34.3%
4f7kA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.55 42.0 3.94e-01 82.2% 97.8%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 43.0 4.26e-01 92.5% 81.4%
5oynA01 3.50.30.80 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like 0.52 38.0 3.39e-01 87.9% 50.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581338 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.78 64.0 6.79e-01 100.0% 97.9%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.76 62.0 6.55e-01 100.0% 98.9%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.72 59.0 6.25e-01 99.1% 100.0%
3928609 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 51.0 5.00e-01 85.0% 93.9%
3213040 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 41.0 4.42e-01 100.0% 77.5%
3226640 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.33e-01 90.7% 76.8%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 45.0 4.26e-01 96.3% 71.5%
3211964 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.56 40.0 4.13e-01 91.6% 76.0%
3622421 2.1.1.217 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd 0.55 32.0 3.91e-01 84.1% 88.6%
5019420 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 46.0 4.25e-01 95.3% 77.9%
4123057 11.1.4.43 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › X25_BaPul_like 0.53 39.0 3.90e-01 97.2% 73.0%
3365160 3156.1.1.20 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase, Cu-oxidase_2, Cu-oxidase_3 0.53 45.0 3.19e-01 94.4% 45.7%
3739833 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 4.08e-01 84.1% 88.2%
4133593 2.1.1.275 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31102 0.52 40.0 3.47e-01 84.1% 83.4%
3997132 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 37.0 4.09e-01 74.8% 100.0%
4943514 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.94e-01 83.2% 93.8%
3601413 10.15.1.0 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like 0.50 38.0 3.58e-01 88.8% 64.2%
4975253 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 35.0 3.88e-01 100.0% 91.8%
5037079 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 30.0 3.68e-01 84.1% 98.5%