Back to structures

MZ820085.1__QZE10492.1__SEA_SCOOBYDOOBYDOO_175__00141

Bact-Vir

MZ820085.1__QZE10492.1__SEA_SCOOBYDOOBYDOO_175__00141

Identity

Accession:
MZ820085 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.36e-01 83.9% 71.2%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 52.0 4.40e-01 79.0% 46.2%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.71 61.0 5.17e-01 100.0% 69.4%
2mg4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 49.0 4.89e-01 88.7% 69.7%
4edgA03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.71 48.0 4.94e-01 74.2% 75.0%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 48.0 4.18e-01 77.4% 46.9%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 52.0 4.12e-01 83.9% 39.8%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 57.0 4.93e-01 96.8% 66.7%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.76e-01 77.4% 80.3%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.68 48.0 5.02e-01 75.8% 82.1%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 48.0 4.87e-01 80.6% 78.7%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.66 48.0 4.78e-01 77.4% 82.5%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.09e-01 77.4% 48.5%
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.65 56.0 4.83e-01 100.0% 74.0%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 50.0 3.78e-01 83.9% 96.7%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.65 50.0 3.77e-01 83.9% 57.4%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 55.0 4.47e-01 100.0% 93.7%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 44.0 4.94e-01 77.4% 100.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 49.0 4.63e-01 90.3% 81.0%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 52.0 4.61e-01 100.0% 90.8%
2cfoA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 50.0 4.39e-01 98.4% 87.5%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 52.0 3.71e-01 100.0% 68.9%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 45.0 4.09e-01 80.6% 88.6%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 44.0 4.01e-01 77.4% 86.9%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.61 44.0 4.03e-01 79.0% 76.5%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 49.0 4.44e-01 96.8% 90.3%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.60 42.0 4.23e-01 74.2% 75.0%
1e7pC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.60 44.0 2.95e-01 80.6% 39.8%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 41.0 3.14e-01 74.2% 78.9%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 39.0 4.35e-01 72.6% 91.5%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.06e-01 82.3% 56.4%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.58 48.0 3.71e-01 95.2% 88.0%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.68e-01 98.4% 90.9%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.58 42.0 3.60e-01 77.4% 53.5%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.57 46.0 4.28e-01 91.9% 82.9%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.45e-01 98.4% 86.2%
3l4aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 45.0 3.71e-01 91.9% 52.9%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 36.0 3.49e-01 71.0% 56.8%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.55 41.0 3.42e-01 85.5% 92.7%
1j6oA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 48.0 3.17e-01 98.4% 95.8%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 37.0 3.54e-01 72.6% 75.0%
3nqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.54 43.0 3.36e-01 91.9% 40.4%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 37.0 3.46e-01 74.2% 63.4%
6p6jB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.77e-01 88.7% 51.1%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 39.0 3.68e-01 82.3% 87.8%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.50 36.0 3.43e-01 77.4% 96.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979215 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 57.0 6.04e-01 82.3% 87.3%
4949368 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 6.07e-01 87.1% 89.1%
4944587 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.74 54.0 4.57e-01 79.0% 47.6%
5017264 5050.1.1.53 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MarC 0.72 56.0 3.97e-01 83.9% 73.0%
3947986 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.72 50.0 5.08e-01 83.9% 75.0%
3445817 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.72 50.0 5.61e-01 79.0% 100.0%
5025032 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.71 51.0 5.54e-01 90.3% 96.0%
5018159 101.29.1.1 alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like › DUF790 0.70 52.0 5.59e-01 90.3% 98.0%
3924925 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.70 51.0 4.24e-01 80.6% 53.0%
3717244 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 4.85e-01 90.3% 68.6%
3601959 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 50.0 4.11e-01 77.4% 45.5%
4960839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.32e-01 79.0% 53.0%
3269226 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 59.0 5.60e-01 100.0% 81.3%
4323805 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.68 55.0 3.89e-01 100.0% 27.6%
2913 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.68 49.0 4.76e-01 77.4% 80.3%
3927015 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 58.0 4.65e-01 96.8% 53.6%
3575981 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 55.0 5.07e-01 88.7% 93.8%
3944885 101.1.1.355 alpha arrays › HTH › HTH › Three-helical HTH › DUF2857 0.67 54.0 5.41e-01 93.5% 86.2%
4182308 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.67 58.0 4.02e-01 100.0% 39.5%
4982919 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 49.0 4.10e-01 85.5% 43.5%
3834278 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.67 50.0 5.00e-01 83.9% 81.5%
3388881 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.66 51.0 4.71e-01 87.1% 68.2%
2142130 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.66 53.0 4.00e-01 100.0% 34.5%
3925823 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.66 48.0 4.05e-01 79.0% 52.7%
4605392 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.66 56.0 4.20e-01 100.0% 52.4%
4536901 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.66 57.0 4.21e-01 100.0% 48.8%
4436242 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.66 53.0 3.96e-01 100.0% 34.1%
4619918 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 54.0 3.28e-01 96.8% 18.1%
3325325 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 56.0 5.22e-01 100.0% 92.5%
5080195 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 49.0 2.98e-01 90.3% 11.5%
3203415 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.65 49.0 4.40e-01 80.6% 78.8%
3742058 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 55.0 3.26e-01 96.8% 19.4%
4229362 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.63 51.0 3.93e-01 98.4% 52.1%
4191850 613.1.1.1 alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.63 54.0 3.70e-01 100.0% 57.5%
5027211 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.62 43.0 3.10e-01 72.6% 24.2%
4169668 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.62 51.0 3.94e-01 98.4% 54.1%
4575447 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.62 54.0 4.17e-01 100.0% 61.4%
4941656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.28e-01 80.6% 67.5%
4955389 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.62 47.0 4.90e-01 85.5% 92.7%
5046018 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 47.0 4.35e-01 83.9% 65.0%
4675322 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.61 49.0 3.81e-01 98.4% 52.8%
None 0.61 49.0 3.00e-01 98.4% 18.4%
4201679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 45.0 4.11e-01 80.6% 60.0%
None 0.60 49.0 3.01e-01 98.4% 22.0%
3222238 101.1.2.649 alpha arrays › HTH › HTH › winged helix domain › PF28730 0.60 44.0 4.26e-01 80.6% 80.0%
3615974 3755.3.1.288 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LMBR1 0.60 45.0 3.48e-01 80.6% 48.9%
4280641 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.59 49.0 3.76e-01 100.0% 50.9%
2488194 101.8.1.1 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.59 50.0 3.40e-01 98.4% 27.6%
4954895 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 41.0 3.64e-01 74.2% 100.0%
5047541 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.58 48.0 3.19e-01 98.4% 49.3%
1780091 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.56 45.0 3.53e-01 100.0% 38.0%
4794011 210.1.2.7 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta 0.52 40.0 3.49e-01 85.5% 62.7%