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MZ820085.1__QZE10503.1__SEA_SCOOBYDOOBYDOO_186__00152

Bact-Vir

MZ820085.1__QZE10503.1__SEA_SCOOBYDOOBYDOO_186__00152

Identity

Accession:
MZ820085 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_ScoobyDoobyDoo

TaxID: 2871542

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-124
PDB
Domain cluster: rep: NC_019496.1__YP_007004032.1__F431_gp46__00046__D205-319
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.58 31.0 3.76e-01 78.9% 83.1%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.53 33.0 3.38e-01 79.8% 64.1%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.99e-01 89.9% 86.7%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 3.07e-01 89.0% 96.6%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 42.0 3.17e-01 93.6% 97.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.61 43.0 4.94e-01 95.4% 100.0%
4956106 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 28.0 3.39e-01 72.5% 74.3%
4216985 331.19.1.2 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.54 39.0 4.27e-01 96.3% 95.3%
4042289 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.54 43.0 3.31e-01 87.2% 84.2%
3548841 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.53 43.0 3.26e-01 89.0% 84.6%
3416893 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.52 44.0 3.45e-01 90.8% 81.3%
3676566 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 41.0 2.82e-01 84.4% 48.5%
3964837 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 30.0 3.53e-01 76.1% 84.0%
3523439 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 40.0 2.81e-01 84.4% 51.5%
3698267 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.50 43.0 3.54e-01 91.7% 98.4%
D2 medium residues 164-177_234-369
PDB
Domain cluster: rep: MH673673.1__AYJ73914.1__phiLo_62__00062__D195-328
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13155.13 best Toprim_2 36.5 7.30e-09 56.0% 97.7%
PF13662.13 Toprim_4 35.8 1.00e-08 50.7% 92.8%
PF01751.29 Toprim 27.5 4.10e-06 50.7% 87.5%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5gujA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.86 68.0 7.41e-01 80.7% 100.0%
5vazA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.86 68.0 7.31e-01 81.3% 100.0%
2au3A03 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.85 67.0 7.35e-01 81.3% 100.0%
1q57G02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.78 64.0 6.91e-01 84.7% 100.0%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.76 54.0 6.02e-01 73.3% 100.0%
5uj1A01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 53.0 5.42e-01 76.0% 100.0%
4cgyA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 50.0 4.74e-01 71.3% 93.2%
5gvcB01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 50.0 4.88e-01 74.0% 100.0%
1bgwA02 3.40.50.670 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 50.0 4.84e-01 77.3% 91.8%
6m9uB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 46.0 3.92e-01 72.7% 86.0%
1xdwA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 43.0 4.58e-01 72.0% 100.0%
2qv7A01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.61 45.0 4.65e-01 77.3% 97.2%
1y8qB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 45.0 4.03e-01 79.3% 95.9%
3l6dA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 43.0 4.25e-01 75.3% 86.0%
1e8cB03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.59 39.0 4.05e-01 80.0% 69.0%
3h2zA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 42.0 3.85e-01 73.3% 92.5%
3ws7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 44.0 4.20e-01 78.0% 97.1%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 40.0 3.89e-01 70.7% 91.3%
3qhaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 43.0 4.21e-01 75.3% 100.0%
1t35E00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 3.81e-01 70.7% 97.3%
1sc6A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 42.0 4.41e-01 75.3% 100.0%
2cvzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 41.0 4.07e-01 75.3% 100.0%
2gf2A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 41.0 4.06e-01 76.7% 100.0%
1vecA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 40.0 3.65e-01 75.3% 68.9%
4gudB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 38.0 3.49e-01 70.0% 98.0%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 38.0 3.44e-01 71.3% 74.8%
3svtA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 47.0 3.87e-01 95.3% 75.5%
3lk7A03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.54 35.0 3.71e-01 85.3% 73.1%
2w7tA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 42.0 3.47e-01 82.0% 49.6%
2qe6A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.79e-01 92.0% 98.1%
1p90A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.53 38.0 4.10e-01 72.7% 94.3%
7zp2C02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.53 39.0 3.85e-01 76.0% 82.1%
4kdcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 4.01e-01 94.0% 99.5%
1jsxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 4.11e-01 92.0% 99.5%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 42.0 3.57e-01 87.3% 71.6%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 4.00e-01 94.0% 96.2%
3bzbB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.96e-01 91.3% 100.0%
3mtiB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 3.59e-01 76.7% 77.2%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 4.01e-01 91.3% 96.9%
4dcmA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 4.09e-01 92.0% 97.8%
4djaA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 36.0 3.51e-01 71.3% 73.6%
5a0tB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 42.0 3.41e-01 89.3% 68.9%
7wm5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.97e-01 94.0% 89.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4504313 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.88 70.0 7.62e-01 81.3% 99.2%
4114168 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.87 67.0 7.38e-01 79.3% 100.0%
4507511 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.87 75.0 6.83e-01 89.3% 72.6%
4403849 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.87 65.0 7.35e-01 86.0% 100.0%
3964049 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.86 69.0 7.35e-01 82.0% 100.0%
3837934 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.86 67.0 7.38e-01 80.7% 100.0%
4191035 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.86 67.0 7.29e-01 80.0% 99.2%
5053984 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.86 65.0 7.24e-01 85.3% 97.5%
4429071 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.85 67.0 7.12e-01 81.3% 92.6%
4345684 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.85 65.0 7.24e-01 78.0% 100.0%
4675929 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.85 67.0 7.30e-01 80.7% 98.4%
4089575 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.85 66.0 7.37e-01 87.3% 100.0%
4403556 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.85 66.0 7.33e-01 87.3% 100.0%
3966687 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.85 67.0 7.18e-01 81.3% 98.5%
4305698 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.85 66.0 7.18e-01 80.0% 98.4%
3517999 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.84 66.0 7.18e-01 80.0% 100.0%
4441825 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.84 65.0 7.13e-01 80.0% 100.0%
4524852 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.83 58.0 6.60e-01 71.3% 100.0%
4249160 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.82 63.0 6.75e-01 79.3% 100.0%
4426393 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.81 64.0 6.90e-01 82.0% 98.5%
4185535 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.81 56.0 6.47e-01 70.0% 96.4%
1407540 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.81 62.0 6.85e-01 80.0% 99.2%
4041525 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.81 60.0 6.71e-01 76.7% 100.0%
3285475 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.80 63.0 6.65e-01 82.0% 98.5%
4134333 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.79 68.0 6.89e-01 92.0% 90.0%
4023806 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.79 62.0 6.30e-01 80.0% 100.0%
4091584 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.79 66.0 7.09e-01 89.3% 100.0%
4946248 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.79 65.0 6.89e-01 86.7% 95.6%
4988770 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.78 54.0 5.06e-01 70.0% 100.0%
3519195 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.77 60.0 6.68e-01 81.3% 100.0%
4617834 2006.1.3.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_3 0.73 58.0 5.48e-01 82.0% 88.0%
4375310 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.73 53.0 5.76e-01 74.7% 100.0%
3786876 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.72 50.0 5.14e-01 70.7% 100.0%
3692627 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.72 51.0 4.75e-01 72.7% 98.9%
3953940 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.72 52.0 5.21e-01 73.3% 94.0%
3947600 2006.1.3.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_3 0.72 55.0 5.80e-01 79.3% 92.6%
3926208 2010.1.1.2 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 0.69 54.0 5.09e-01 82.0% 85.0%
4994683 7522.1.1.0 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.68 52.0 5.69e-01 80.0% 96.8%
4937463 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.68 49.0 5.47e-01 76.0% 92.5%
5071855 7522.1.1.0 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.64 53.0 5.16e-01 88.0% 85.5%
4598878 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.63 49.0 4.67e-01 80.7% 99.4%
5055055 2003.1.1.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ApbA 0.62 43.0 3.96e-01 70.0% 95.8%
3741067 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.61 46.0 3.92e-01 78.7% 85.2%
3978904 2003.1.1.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Mannitol_dh 0.61 42.0 3.84e-01 70.7% 92.7%
4046202 2003.1.1.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Mannitol_dh 0.61 43.0 3.92e-01 73.3% 93.2%
1174261 2003.1.1.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored 0.60 44.0 4.32e-01 76.0% 100.0%
5009873 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.60 45.0 4.24e-01 77.3% 91.7%
3190848 2003.1.1.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Mannitol_dh 0.60 43.0 3.88e-01 75.3% 91.2%
3218897 7585.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.59 43.0 4.45e-01 74.0% 80.0%
None — 0.59 43.0 4.26e-01 75.3% 100.0%
4935580 2003.1.9.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.59 44.0 4.54e-01 78.7% 100.0%
None — 0.58 44.0 4.00e-01 79.3% 85.2%
4939285 7544.1.1.1 ↗ a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 0.57 42.0 3.39e-01 75.3% 82.7%
3226345 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 40.0 4.44e-01 74.0% 98.3%
3795476 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.56 48.0 4.01e-01 94.7% 86.3%
3628829 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.55 48.0 3.87e-01 94.0% 86.9%
D3 medium residues 178-233
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 42.0 3.31e-01 71.4% 28.9%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 54.0 4.20e-01 100.0% 75.2%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 52.0 3.88e-01 98.2% 73.3%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.58 45.0 4.15e-01 100.0% 64.9%
1ro5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.31e-01 94.6% 54.0%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 3.84e-01 96.4% 52.6%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 49.0 3.62e-01 100.0% 58.9%
7dfqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 49.0 3.76e-01 96.4% 94.4%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 47.0 3.37e-01 94.6% 58.1%
2fa1A00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.55 44.0 3.30e-01 94.6% 81.1%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.84e-01 91.1% 73.3%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.54 39.0 4.00e-01 91.1% 81.8%
2napA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.54 39.0 3.90e-01 91.1% 77.6%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 42.0 3.38e-01 96.4% 58.8%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.53 41.0 3.61e-01 89.3% 77.8%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.53 45.0 2.84e-01 96.4% 38.4%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 44.0 3.48e-01 100.0% 60.5%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 44.0 3.44e-01 100.0% 59.6%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.79e-01 85.7% 88.0%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 43.0 3.06e-01 98.2% 95.2%
2ae6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.19e-01 94.6% 51.7%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 44.0 3.84e-01 100.0% 83.0%
1q16A03 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.51 37.0 4.01e-01 91.1% 93.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.51 42.0 3.72e-01 91.1% 80.0%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 41.0 3.01e-01 100.0% 30.2%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 41.0 3.01e-01 94.6% 52.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.70e-01 91.1% 77.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995760 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.85 70.0 6.24e-01 98.2% 65.3%
3297022 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.78 59.0 5.30e-01 100.0% 60.0%
4028791 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.73 45.0 4.58e-01 71.4% 63.6%
3181136 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.63 51.0 3.94e-01 91.1% 58.5%
3734022 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.62 52.0 3.45e-01 100.0% 87.0%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.61 44.0 3.44e-01 78.6% 97.6%
4367085 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 54.0 4.68e-01 100.0% 81.2%
4052375 7580.1.1.1 ↗ a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.60 51.0 3.76e-01 96.4% 56.0%
4502261 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 43.0 3.35e-01 76.8% 94.4%
3249266 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.59 45.0 3.38e-01 89.3% 60.1%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.57 47.0 4.42e-01 96.4% 75.7%
4991451 213.1.1.17 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 0.56 46.0 3.54e-01 100.0% 37.9%
4369577 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.56 44.0 4.39e-01 92.9% 98.3%
4305702 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.55 44.0 4.01e-01 96.4% 65.0%
5063650 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.55 48.0 3.47e-01 100.0% 46.3%
3838919 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 46.0 3.49e-01 98.2% 39.3%
3368888 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.54 38.0 3.03e-01 76.8% 92.0%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 45.0 3.87e-01 98.2% 61.1%
3622645 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 45.0 3.86e-01 98.2% 61.1%
4977521 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 45.0 3.52e-01 100.0% 55.6%
3946293 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.53 43.0 4.20e-01 96.4% 84.6%
4964517 213.1.1.36 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_17 0.53 44.0 3.28e-01 94.6% 57.3%
3943177 1001.1.1.9 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdopterin, Molybdop_Fe4S4 0.53 43.0 3.34e-01 94.6% 40.7%
4023055 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.53 45.0 3.70e-01 98.2% 98.1%
3913519 216.1.1.9 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 0.52 44.0 3.71e-01 100.0% 69.5%
3417430 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 44.0 3.63e-01 100.0% 54.3%
5038572 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 40.0 3.07e-01 94.6% 36.7%