←Back to structures

MZ868726.1__UAW09888.1__APK77_22__00022

Bact-Vir

MZ868726.1__UAW09888.1__APK77_22__00022

Identity

Accession:
MZ868726 ↗
Kingdom:
phage

Quality

54.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Friunavirus› Acinetobacter_phage_APK77

TaxID: 2873389

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-108
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 49.0 4.73e-01 74.1% 98.4%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 3.80e-01 74.1% 80.0%
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.67 53.0 4.97e-01 90.7% 87.1%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.67 53.0 3.92e-01 87.0% 79.4%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.66 51.0 3.83e-01 87.0% 80.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.54e-01 74.1% 77.8%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.86e-01 87.0% 100.0%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 4.08e-01 72.2% 80.9%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.48e-01 74.1% 67.8%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.63 49.0 4.87e-01 92.6% 93.2%
7yteC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.17e-01 92.6% 87.1%
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.61 38.0 3.84e-01 70.4% 61.1%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 49.0 4.09e-01 92.6% 91.8%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 4.01e-01 88.9% 92.8%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 3.52e-01 85.2% 73.0%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.57 46.0 3.52e-01 90.7% 74.4%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 45.0 3.80e-01 92.6% 84.0%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.57 43.0 3.67e-01 85.2% 80.2%
4dixA01 2.60.40.2700 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.89e-01 88.9% 81.6%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.21e-01 83.3% 47.1%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 44.0 3.60e-01 92.6% 85.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.68e-01 87.0% 71.4%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.55 41.0 3.74e-01 87.0% 66.3%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.55 42.0 2.93e-01 90.7% 27.3%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 42.0 2.89e-01 90.7% 62.1%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.62e-01 94.4% 73.5%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.24e-01 87.0% 50.8%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 3.41e-01 88.9% 80.5%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.52 39.0 3.36e-01 88.9% 74.0%
3kq5A01 1.10.3210.40 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.52 40.0 2.78e-01 88.9% 63.8%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 2.85e-01 72.2% 74.4%
6genR01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 37.0 3.16e-01 75.9% 46.8%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.52 39.0 3.14e-01 85.2% 53.3%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.24e-01 87.0% 84.5%
4j2gA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 40.0 2.83e-01 90.7% 57.4%
2hg6A00 3.90.1650.10 Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like 0.51 36.0 3.01e-01 75.9% 73.6%
5t17A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.50 38.0 3.43e-01 88.9% 62.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2760811 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.69 48.0 4.55e-01 74.1% 98.5%
3275743 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.68 49.0 3.90e-01 75.9% 68.6%
5037328 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 53.0 3.97e-01 90.7% 72.9%
3249371 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.64 46.0 3.49e-01 75.9% 53.1%
4946007 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 52.0 3.92e-01 90.7% 59.3%
4942475 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.64 48.0 4.43e-01 85.2% 90.7%
4829603 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.64 43.0 4.03e-01 72.2% 75.7%
5061602 221.1.1.50 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.63 51.0 4.02e-01 92.6% 90.0%
4942277 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.62 48.0 4.33e-01 85.2% 89.3%
3921486 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.62 43.0 2.80e-01 74.1% 26.7%
3638300 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.62 44.0 3.34e-01 77.8% 61.4%
3455769 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 49.0 3.93e-01 88.9% 87.3%
3727999 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.60 43.0 2.55e-01 79.6% 48.6%
3472024 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.59 40.0 4.06e-01 81.5% 70.9%
3707721 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 3.71e-01 87.0% 76.7%
3879537 221.1.1.94 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AIP3 0.59 46.0 4.12e-01 87.0% 96.2%
3806578 376.1.1.59 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-B_box 0.59 38.0 4.10e-01 70.4% 80.0%
5056818 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.59 45.0 4.22e-01 85.2% 75.7%
3699982 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 49.0 3.80e-01 92.6% 78.3%
3482257 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 47.0 3.65e-01 90.7% 92.0%
3482241 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.01e-01 92.6% 81.1%
3269251 221.1.1.7 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.57 44.0 3.83e-01 88.9% 83.3%
432311 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.57 38.0 3.43e-01 70.4% 77.5%
4457666 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.57 38.0 3.42e-01 70.4% 76.2%
4409502 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.57 42.0 3.49e-01 85.2% 61.8%
3476917 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 44.0 3.70e-01 90.7% 85.7%
3597362 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 46.0 3.68e-01 92.6% 86.1%
3613993 221.1.1.62 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › BILBO1_N 0.56 46.0 3.71e-01 92.6% 86.4%
5082395 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.56 40.0 2.52e-01 75.9% 24.6%
3601157 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 46.0 3.72e-01 92.6% 86.4%
3781851 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.56 40.0 2.63e-01 77.8% 69.0%
3595603 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 45.0 3.98e-01 88.9% 93.8%
3512155 560.1.1.3 ↗ few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 0.55 38.0 3.30e-01 75.9% 47.4%
3700526 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.68e-01 94.4% 80.9%
4887308 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.55 41.0 4.06e-01 87.0% 82.8%
4147685 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.54 41.0 3.39e-01 87.0% 62.7%
3928042 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.54e-01 88.9% 85.0%
3186068 10.32.1.204 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Rax2_2 0.52 39.0 2.84e-01 85.2% 56.6%
3177995 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.52 39.0 2.26e-01 83.3% 36.3%
3608812 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.09e-01 92.6% 62.8%
3963052 4154.1.1.4 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › Exonuc_VII_L 0.52 33.0 2.82e-01 70.4% 33.3%
3738599 221.1.1.51 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.51 39.0 3.41e-01 90.7% 92.6%
4958502 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 39.0 3.74e-01 85.2% 78.5%
3594291 221.1.1.62 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › BILBO1_N 0.51 40.0 3.43e-01 98.1% 86.7%
3253616 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.50 34.0 2.50e-01 74.1% 58.4%
D2 medium residues 1-48_109-144
PDB