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MZ892989.1__UAW59026.1__CRP235_gp01__00001

Bact-Vir

MZ892989.1__UAW59026.1__CRP235_gp01__00001

Identity

Accession:
MZ892989 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.78 55.0 3.81e-01 100.0% 23.2%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.78 52.0 3.60e-01 98.2% 22.1%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.75 52.0 3.60e-01 100.0% 22.7%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.75 66.0 4.32e-01 100.0% 37.3%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.74 50.0 3.48e-01 96.4% 21.5%
2g7uC02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.71 50.0 3.50e-01 100.0% 23.0%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.71 61.0 4.60e-01 100.0% 41.1%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.71 49.0 2.89e-01 72.7% 12.1%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.70 47.0 4.42e-01 70.9% 57.6%
5w1eA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.70 48.0 3.35e-01 100.0% 21.4%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.69 48.0 3.41e-01 100.0% 23.0%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.69 58.0 4.36e-01 100.0% 58.5%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.69 45.0 3.97e-01 72.7% 45.8%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.67 55.0 4.11e-01 94.5% 82.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.67 45.0 3.39e-01 70.9% 40.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 37.0 3.30e-01 92.7% 37.5%
2f4mA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.66 54.0 3.57e-01 92.7% 32.2%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.65 47.0 3.26e-01 78.2% 88.2%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 48.0 3.80e-01 80.0% 92.7%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 48.0 3.69e-01 80.0% 89.8%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 48.0 3.73e-01 80.0% 93.0%
1i8nA00 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.62 50.0 4.35e-01 92.7% 62.9%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 49.0 3.04e-01 89.1% 63.8%
2w3sA04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 46.0 3.64e-01 81.8% 91.2%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 41.0 3.32e-01 78.2% 35.7%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.76e-01 74.5% 53.3%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.60 51.0 3.79e-01 100.0% 90.8%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.68e-01 72.7% 52.0%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 49.0 3.97e-01 100.0% 50.8%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.59 45.0 3.29e-01 87.3% 34.9%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 49.0 4.57e-01 96.4% 80.3%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 2.79e-01 89.1% 63.9%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 45.0 2.77e-01 87.3% 94.0%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.57 40.0 3.34e-01 76.4% 87.7%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.57 43.0 3.10e-01 85.5% 81.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 48.0 3.14e-01 94.5% 40.7%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.56 46.0 3.15e-01 100.0% 74.1%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 3.59e-01 98.2% 70.6%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 48.0 3.01e-01 100.0% 39.9%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.54 49.0 2.93e-01 100.0% 14.9%
2jtcA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.53 43.0 2.90e-01 98.2% 82.6%
1oi0A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 42.0 3.59e-01 98.2% 50.0%
7l5aA02 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 46.0 3.46e-01 98.2% 97.8%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 3.31e-01 76.4% 83.7%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 46.0 3.50e-01 100.0% 96.2%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 36.0 3.46e-01 70.9% 93.8%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.49e-01 90.9% 67.8%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 40.0 3.68e-01 90.9% 63.3%
4dohE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 2.94e-01 100.0% 40.8%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.50 37.0 3.10e-01 100.0% 43.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289410 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.77 55.0 3.35e-01 74.5% 12.8%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.75 52.0 3.87e-01 72.7% 78.5%
4650634 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.75 66.0 4.24e-01 100.0% 38.0%
143128 304.55.1.4 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › T_Ag_DNA_bind 0.72 58.0 4.59e-01 90.9% 69.7%
3271532 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.70 43.0 2.98e-01 100.0% 20.0%
4988104 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.70 48.0 4.10e-01 72.7% 93.3%
4255735 101.1.9.98 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.68 58.0 4.55e-01 100.0% 47.2%
4134159 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.67 55.0 3.75e-01 89.1% 35.7%
4180400 2492.1.1.25 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF1846_C 0.67 53.0 3.97e-01 92.7% 78.7%
4321682 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.67 57.0 4.30e-01 98.2% 42.1%
4550826 3012.1.1.4 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.66 41.0 3.32e-01 70.9% 32.4%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.66 54.0 4.89e-01 96.4% 100.0%
5001157 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.66 46.0 4.06e-01 74.5% 50.6%
4074433 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.66 42.0 3.38e-01 72.7% 33.3%
5063169 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.66 49.0 3.47e-01 80.0% 65.0%
4106902 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.65 52.0 3.59e-01 89.1% 34.7%
3593119 3351.1.1.0 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.65 53.0 4.21e-01 100.0% 51.5%
5042324 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.64 53.0 4.55e-01 92.7% 76.7%
1734642 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.64 48.0 3.34e-01 80.0% 59.4%
4525796 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.64 53.0 4.08e-01 100.0% 42.4%
4276637 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.64 53.0 3.63e-01 92.7% 33.2%
4614587 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.64 55.0 3.70e-01 96.4% 32.7%
4935672 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.63 52.0 3.99e-01 96.4% 48.6%
4953829 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.63 53.0 3.49e-01 92.7% 27.0%
4888097 5073.1.1.12 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.63 49.0 2.88e-01 83.6% 86.7%
4142507 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.63 54.0 3.70e-01 96.4% 33.8%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.63 51.0 3.84e-01 94.5% 45.0%
3383616 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.62 45.0 2.54e-01 76.4% 11.9%
3349809 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.62 45.0 2.58e-01 76.4% 14.3%
4552838 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.62 50.0 4.30e-01 92.7% 83.9%
4052432 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.62 52.0 3.59e-01 92.7% 32.4%
3322777 109.4.1.1738 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.62 45.0 2.69e-01 76.4% 20.5%
4944194 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.61 45.0 3.18e-01 81.8% 58.3%
3927984 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.70e-01 85.5% 50.0%
3781577 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.60 44.0 2.74e-01 100.0% 12.3%
3679150 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.60 47.0 2.70e-01 100.0% 9.2%
5062797 217.1.1.1 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.60 51.0 3.48e-01 96.4% 62.1%
3362593 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 45.0 3.64e-01 83.6% 46.0%
2042105 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.59 52.0 3.52e-01 100.0% 88.2%
4233833 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 45.0 2.70e-01 85.5% 29.9%
None 0.58 50.0 3.26e-01 96.4% 86.4%
3507667 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.58 47.0 4.27e-01 100.0% 67.5%
3618432 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.57 46.0 3.97e-01 92.7% 62.1%
605 4.1.2.1 beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.57 40.0 3.34e-01 76.4% 87.7%
3365334 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.56 46.0 2.61e-01 90.9% 22.2%
2392884 227.1.1.14 a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.55 44.0 3.62e-01 98.2% 59.2%
3673264 11.1.1.855 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 0.55 40.0 2.74e-01 92.7% 23.3%
3657071 109.4.1.2208 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.55 49.0 2.93e-01 100.0% 75.1%
3884006 11.1.1.1013 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26755 0.55 39.0 3.43e-01 76.4% 82.4%
3696190 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 38.0 3.02e-01 74.5% 87.5%
4031218 206.1.3.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Lant_dehydr_N 0.53 39.0 2.33e-01 100.0% 9.1%
3259222 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.51 47.0 2.74e-01 100.0% 21.0%
3518046 1207.1.1.1 a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.51 38.0 2.44e-01 85.5% 32.9%
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 44.0 3.90e-01 96.4% 81.2%