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MZ892990.1UAW59127.1CRP345_gp41__00041

Bact-Vir

MZ892990.1__UAW59127.1__CRP345_gp41__00041

Identity

Accession:: MZ892990 ↗
Kingdom:: phage

Quality

69.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-345

TaxID: 2873407

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-128_155-175

PDB

D2 medium residues 176-302

PDB

Domain cluster: representative

CATH (28)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fioA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	58.0	5.05e-01	91.3%	81.1%
4o92A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.66	43.0	4.72e-01	94.5%	81.0%
4g10A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.65	50.0	4.92e-01	96.1%	75.0%
3e4bA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.61	41.0	2.92e-01	100.0%	22.0%
3fr3B02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	46.0	4.78e-01	99.2%	86.1%
2fupA00	1.20.58.300	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like	0.61	49.0	4.97e-01	84.3%	92.1%
8alzB08	1.10.3380.10	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain	0.58	45.0	4.54e-01	83.5%	96.9%
2fefA01	1.20.1440.70	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like	0.57	38.0	3.84e-01	83.5%	68.0%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	38.0	3.95e-01	74.8%	73.7%
2w53B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	43.0	3.88e-01	87.4%	59.0%
6a95A01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.56	38.0	3.82e-01	86.6%	69.0%
4hz4A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	39.0	4.11e-01	89.0%	83.0%
2o8pA00	1.20.190.20	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain	0.54	49.0	4.09e-01	99.2%	59.8%
4qndA00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.54	36.0	3.99e-01	80.3%	86.6%
4i1eA03	1.25.10.30	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain	0.54	45.0	4.44e-01	89.8%	91.4%
1ya0A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	46.0	4.02e-01	100.0%	60.7%
5dlqB01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.52	48.0	3.29e-01	100.0%	34.6%
1oxjA02	1.25.40.170	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain	0.52	41.0	4.34e-01	99.2%	96.3%
1kt1A03	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	40.0	3.78e-01	100.0%	66.5%
7wz5A01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	34.0	3.27e-01	98.4%	57.0%
5cy5B00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.51	39.0	3.77e-01	90.6%	69.1%
1umnG00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	42.0	3.85e-01	87.4%	87.9%
2j0wA02	1.20.120.1320	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain	0.51	34.0	3.92e-01	89.0%	92.5%
2c41C01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	39.0	3.76e-01	81.1%	93.3%
1zvzA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	40.0	4.12e-01	90.6%	85.5%
4lunU00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	45.0	3.40e-01	98.4%	54.3%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.50	39.0	3.83e-01	81.1%	92.0%
5iduA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.50	36.0	3.73e-01	88.2%	79.2%

ECOD (37)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4304173	1075.1.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane	0.64	52.0	4.04e-01	86.6%	90.5%
3833720	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	57.0	3.20e-01	100.0%	12.3%
3489618	109.4.1.871 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_R4	0.60	41.0	3.67e-01	100.0%	48.1%
3351521	603.1.1.98 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2	0.60	50.0	4.38e-01	89.8%	89.5%
3768701	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	36.0	2.76e-01	99.2%	24.8%
3236963	603.1.1.109 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF267	0.58	52.0	3.79e-01	100.0%	85.9%
4017520	109.3.1.191 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27566	0.58	52.0	4.28e-01	99.2%	79.5%
3201554	150.1.1.98 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint	0.58	36.0	3.77e-01	78.0%	66.7%
3735273	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	53.0	5.17e-01	100.0%	91.4%
3686849	3924.1.1.0 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2	0.58	49.0	4.33e-01	92.1%	67.6%
4386513	1075.1.1.19 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_4	0.57	46.0	3.86e-01	87.4%	91.6%
3577425	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.56	51.0	3.15e-01	100.0%	28.0%
3607005	109.4.1.657 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4042	0.56	51.0	3.37e-01	100.0%	39.0%
3793906	109.3.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank	0.56	50.0	3.56e-01	100.0%	46.5%
3724315	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	48.0	4.55e-01	92.9%	79.3%
3573380	109.4.1.72 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C	0.56	35.0	2.61e-01	99.2%	22.7%
3591734	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	51.0	3.67e-01	100.0%	56.0%
4958131	109.10.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Translin › Translin	0.55	50.0	4.28e-01	100.0%	63.4%
3809907	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.54	47.0	3.50e-01	95.3%	78.8%
3681244	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	49.0	3.63e-01	100.0%	40.8%
3436107	109.4.1.228 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C	0.53	48.0	3.98e-01	100.0%	66.5%
4934707	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.53	46.0	3.88e-01	92.9%	91.4%
3494936	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	40.0	3.09e-01	89.8%	32.4%
3574551	3826.1.1.58 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › TPR_SYVN1_N	0.53	44.0	4.45e-01	93.7%	89.6%
5048142	3281.1.1.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M	0.53	48.0	3.04e-01	100.0%	45.7%
3957564	132.1.1.1 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding	0.53	32.0	3.41e-01	74.0%	68.2%
3274116	109.4.1.493 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2	0.53	47.0	3.15e-01	99.2%	37.3%
4379165	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.53	45.0	3.80e-01	92.9%	87.4%
3641904	109.4.1.1185 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTB-POZ_ANK-like	0.53	48.0	3.75e-01	100.0%	59.3%
4032631	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.52	45.0	3.86e-01	94.5%	92.2%
3735746	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.51	46.0	3.19e-01	100.0%	57.1%
3723500	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.51	45.0	3.15e-01	100.0%	34.1%
4150714	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	45.0	3.02e-01	99.2%	48.6%
4034410	1075.1.2.16 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DUF1430	0.51	42.0	4.03e-01	92.1%	93.3%
3855357	109.4.1.27 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2	0.51	45.0	4.05e-01	100.0%	70.0%
3701143	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	43.0	3.72e-01	100.0%	57.6%
4024109	109.4.1.37 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BRO1	0.50	44.0	3.20e-01	100.0%	38.2%

D3 medium residues 303-374

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1edzA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.65	47.0	3.66e-01	76.4%	38.5%
5dynA01	3.40.50.11970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.65	47.0	4.15e-01	76.4%	76.4%
4maaA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.64	55.0	4.18e-01	94.4%	87.1%
5ysqB00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.59	46.0	3.09e-01	84.7%	84.3%
1v1aA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.58	44.0	2.93e-01	83.3%	79.7%
3dclA01	2.102.30.10	Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain	0.56	46.0	3.73e-01	95.8%	73.2%
1rznA00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.55	43.0	3.47e-01	86.1%	87.3%
1yueA02	2.10.10.40	Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) ›	0.55	43.0	4.60e-01	81.9%	98.4%
3l4gB04	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.54	42.0	3.20e-01	88.9%	97.5%
1aiwA00	2.10.10.20	Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12	0.54	40.0	4.26e-01	77.8%	91.9%
2v4jA03	3.30.413.10	Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1	0.53	40.0	2.99e-01	80.6%	42.0%
1xg9A02	3.10.25.20	Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 ›	0.52	38.0	4.00e-01	79.2%	98.4%
12asA00	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.52	45.0	2.99e-01	100.0%	84.7%
1ir6A02	3.10.310.30	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.52	38.0	3.21e-01	77.8%	64.3%
2eo0B00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.52	40.0	3.42e-01	86.1%	79.8%
2nxwA02	3.40.50.1220	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain	0.51	43.0	3.36e-01	95.8%	82.0%
3l8kA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	36.0	3.09e-01	76.4%	63.7%
2wylC00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.51	41.0	2.80e-01	93.1%	82.2%
2xgtA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	45.0	2.91e-01	98.6%	81.5%
2lndA00	3.40.50.11230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	43.0	3.76e-01	97.2%	75.9%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4122384	513.1.1.1 ↗	a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967	0.64	44.0	4.32e-01	72.2%	92.5%
9521	2003.6.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB	0.60	46.0	3.10e-01	84.7%	81.3%
4581150	874.1.1.0 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain	0.59	48.0	3.43e-01	91.7%	60.4%
3773860	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.59	48.0	2.81e-01	91.7%	22.2%
4025219	874.1.1.0 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain	0.59	47.0	3.47e-01	90.3%	74.1%
3739778	874.1.1.0 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain	0.58	47.0	3.40e-01	90.3%	70.2%
3617645	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.58	46.0	2.59e-01	90.3%	13.6%
5043110	2003.6.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB	0.58	44.0	2.96e-01	84.7%	84.5%
3688346	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.56	48.0	3.41e-01	100.0%	76.1%
4501626	874.1.1.0 ↗	a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain	0.56	45.0	2.70e-01	90.3%	26.3%
3239789	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.55	44.0	3.27e-01	91.7%	67.1%
3609461	2007.1.2.28 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase_1	0.54	42.0	3.34e-01	91.7%	90.3%
3608278	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.54	39.0	2.47e-01	79.2%	98.2%
4027012	5104.1.1.0 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases	0.54	38.0	3.26e-01	76.4%	70.4%
806	270.1.1.4 ↗	beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C_2	0.52	38.0	4.00e-01	79.2%	98.4%
3713080	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	37.0	2.38e-01	80.6%	99.0%