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MZ892993.1UAW59361.1HTVC033P_gp52__00052

Bact-Vir

MZ892993.1__UAW59361.1__HTVC033P_gp52__00052

Identity

Accession:: MZ892993 ↗
Kingdom:: phage

Quality

64.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC033P

TaxID: 2873403

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 962-1058

PDB

Domain cluster: rep: KC465898.1__AGE60290.1__X__00020__D272-366

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF18857.7 best	LPD38	29.7	9.40e-07	80.4%	35.4%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rc3A05	1.20.58.1080	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	47.0	4.50e-01	100.0%	77.0%
1aueB00	1.20.120.150	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain	0.55	31.0	3.22e-01	100.0%	56.4%
3p9dE01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.55	36.0	2.65e-01	77.3%	24.2%
3u4qA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	40.0	3.12e-01	99.0%	34.6%
3x17A02	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.53	44.0	2.91e-01	92.8%	29.8%
3knwB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	45.0	3.75e-01	100.0%	58.8%
1a3qA01	2.60.40.340	Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain	0.51	44.0	3.63e-01	96.9%	73.2%
8e9gK01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.50	34.0	3.49e-01	93.8%	73.6%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3632323	109.4.1.1580 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C	0.63	42.0	2.82e-01	96.9%	17.4%
4072334	218.1.1.8 ↗	a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA	0.61	35.0	3.47e-01	77.3%	52.0%
4061408	109.4.1.1731 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N	0.60	43.0	2.79e-01	96.9%	15.4%
3326759	284.1.3.1 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5	0.60	35.0	3.95e-01	84.5%	76.0%
3261151	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.59	42.0	3.02e-01	96.9%	24.7%
3261509	109.4.1.890 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C	0.58	42.0	2.57e-01	96.9%	11.1%
3739386	109.4.1.3152 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_16, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N	0.57	42.0	2.58e-01	96.9%	11.4%
3257279	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	36.0	2.27e-01	96.9%	11.1%
3309133	2484.1.1.67 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3	0.56	29.0	3.04e-01	77.3%	52.9%
4639306	109.4.1.1255 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1	0.55	39.0	2.36e-01	96.9%	10.0%
3937690	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.53	40.0	2.89e-01	82.5%	59.4%
3952159	375.1.9.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase	0.53	33.0	3.61e-01	91.8%	80.0%
3307687	3226.1.1.1 ↗	alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease	0.52	41.0	2.82e-01	87.6%	96.4%
3878887	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.52	39.0	2.84e-01	82.5%	60.3%
3303405	109.4.1.1531 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7812	0.51	45.0	2.91e-01	100.0%	26.6%
3734580	101.1.2.535 ↗	alpha arrays › HTH › HTH › winged helix domain › PF25889	0.51	43.0	3.72e-01	95.9%	64.8%
3550790	2002.1.1.12 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1	0.51	44.0	2.85e-01	100.0%	76.7%
5041309	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.51	45.0	3.80e-01	100.0%	92.9%
5058883	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.51	44.0	3.78e-01	95.9%	98.7%
3372442	3542.1.1.3 ↗	alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B	0.51	45.0	3.20e-01	100.0%	81.6%
3178492	633.23.1.9 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7	0.50	38.0	2.83e-01	82.5%	63.3%
3229770	70.3.1.13 ↗	beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL	0.50	41.0	3.26e-01	90.7%	93.8%
3786528	109.4.1.87 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6	0.50	43.0	2.59e-01	100.0%	14.0%
3190533	109.4.1.3564 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_PRP39_N, HAT_PRP39_C	0.50	43.0	2.79e-01	96.9%	24.0%

D2 medium residues 55-171

PDB

D3 medium residues 217-308

PDB

D4 medium residues 309-322_398-550

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ztaA00	1.10.490.130	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.62	39.0	4.27e-01	85.6%	75.5%
1or4B00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.56	37.0	3.84e-01	85.6%	69.6%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	37.0	3.92e-01	85.6%	81.0%
4b4yA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	37.0	3.86e-01	85.6%	79.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5009683	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.53	31.0	3.38e-01	86.2%	67.9%
3787103	1203.1.2.0 ↗	alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2	0.51	31.0	3.43e-01	87.4%	73.6%
3613499	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.50	35.0	3.59e-01	94.6%	72.1%

D5 medium residues 323-397

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.52	40.0	3.04e-01	85.3%	90.3%

D6 medium residues 738-795_926-943

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3739470	192.2.1.31 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1	0.54	43.0	3.56e-01	89.5%	81.4%

D7 medium residues 796-925

PDB