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MZ923504.1__UIU47016.1__X__00002

Bact-Vir

MZ923504.1__UIU47016.1__X__00002

Identity

Accession:
MZ923504 ↗
Kingdom:
phage

Quality

68.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-66
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.69 47.0 4.40e-01 72.2% 57.6%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.68 46.0 3.27e-01 70.4% 25.2%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.65 42.0 3.89e-01 70.4% 50.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 40.0 3.28e-01 98.1% 34.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 38.0 2.82e-01 92.6% 22.5%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 40.0 3.81e-01 70.4% 52.2%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 38.0 3.01e-01 92.6% 29.5%
2fb0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 3.57e-01 70.4% 50.0%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 37.0 2.83e-01 98.1% 23.5%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.62 41.0 4.08e-01 72.2% 65.5%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 39.0 2.91e-01 98.1% 24.8%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 38.0 2.80e-01 98.1% 22.5%
2vd3A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 3.67e-01 70.4% 48.6%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 40.0 3.64e-01 70.4% 57.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 37.0 2.78e-01 98.1% 24.6%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 41.0 3.46e-01 72.2% 41.7%
3gygC02 3.30.70.1410 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › yhjk (haloacid dehalogenase-like hydrolase protein) domain 0.59 40.0 3.61e-01 72.2% 52.5%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 2.77e-01 98.1% 24.3%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 3.40e-01 70.4% 49.0%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 3.35e-01 70.4% 50.0%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.25e-01 70.4% 45.3%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 36.0 2.78e-01 98.1% 26.8%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 42.0 2.71e-01 83.3% 34.6%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.56 38.0 3.46e-01 70.4% 51.3%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 2.83e-01 98.1% 27.6%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.61e-01 72.2% 71.9%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 35.0 2.70e-01 100.0% 25.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 36.0 2.94e-01 92.6% 35.2%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 37.0 3.12e-01 70.4% 45.0%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 38.0 2.61e-01 75.9% 20.9%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 35.0 2.55e-01 72.2% 24.0%
2dulA02 3.30.56.70 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › N2,N2-dimethylguanosine tRNA methyltransferase, C-terminal domain 0.54 36.0 3.56e-01 70.4% 71.2%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.54 43.0 3.60e-01 100.0% 47.7%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 36.0 3.28e-01 70.4% 51.2%
2yxlA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.54 35.0 3.49e-01 72.2% 62.1%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 2.83e-01 74.1% 35.1%
3e3xA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 41.0 3.23e-01 83.3% 49.6%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 2.85e-01 75.9% 35.6%
1xaiA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 40.0 2.92e-01 90.7% 62.9%
1sqgA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.52 34.0 3.38e-01 72.2% 63.8%
1k3eB02 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 35.0 3.02e-01 75.9% 43.8%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 35.0 3.27e-01 72.2% 55.7%
3d2wA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 34.0 3.24e-01 72.2% 54.2%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 2.90e-01 70.4% 46.5%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.51 34.0 3.20e-01 72.2% 66.7%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 38.0 2.49e-01 87.0% 79.9%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 2.63e-01 72.2% 33.8%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 2.85e-01 92.6% 37.7%
2kskA00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.50 38.0 3.51e-01 87.0% 63.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 2.72e-01 75.9% 34.0%
1kn6A00 3.30.70.850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain 0.50 32.0 3.04e-01 72.2% 46.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997780 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 51.0 4.47e-01 70.4% 48.8%
3838105 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.76 51.0 4.68e-01 70.4% 54.3%
4885808 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.69 46.0 4.24e-01 72.2% 54.3%
3738385 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.67 36.0 3.12e-01 100.0% 32.9%
5019614 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.66 41.0 2.98e-01 98.1% 22.7%
177170 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.65 39.0 2.70e-01 94.4% 18.1%
5009661 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.65 40.0 2.96e-01 98.1% 24.3%
5045746 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 37.0 4.10e-01 88.9% 75.0%
2549573 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 39.0 2.87e-01 92.6% 23.6%
5049078 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.64 40.0 2.90e-01 98.1% 23.4%
3941407 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.64 40.0 2.91e-01 98.1% 23.4%
3971652 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 2.86e-01 98.1% 21.9%
4201017 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 39.0 2.83e-01 98.1% 21.3%
5021704 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 39.0 2.82e-01 94.4% 22.0%
5035588 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.63 41.0 3.69e-01 72.2% 46.7%
2595 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.63 39.0 2.89e-01 98.1% 24.5%
4464001 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 41.0 3.31e-01 72.2% 32.2%
4132207 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.62 39.0 2.85e-01 98.1% 23.4%
3279585 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.62 38.0 2.83e-01 98.1% 23.4%
4032570 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.62 37.0 2.83e-01 92.6% 25.6%
3286450 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 38.0 2.85e-01 98.1% 24.3%
3959181 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 37.0 3.25e-01 94.4% 40.0%
2593 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 39.0 2.91e-01 98.1% 24.8%
4424168 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.62 37.0 2.79e-01 92.6% 23.7%
5046571 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 38.0 3.24e-01 98.1% 37.8%
4927177 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.61 38.0 2.81e-01 98.1% 22.7%
3530700 4.1.1.331 beta barrels › SH3 › SH3 › SH3 › DUF4708 0.61 45.0 3.89e-01 79.6% 87.1%
3989048 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.61 37.0 2.68e-01 92.6% 21.3%
3974383 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.61 38.0 2.80e-01 98.1% 23.0%
3200904 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.61 41.0 3.79e-01 72.2% 56.0%
5063200 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 38.0 3.32e-01 98.1% 40.0%
1103060 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 36.0 2.68e-01 92.6% 21.2%
4138755 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 38.0 2.83e-01 98.1% 25.2%
4082847 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 38.0 2.82e-01 98.1% 24.3%
4018842 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 3.12e-01 72.2% 50.0%
3290617 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 37.0 2.74e-01 98.1% 23.4%
3966232 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.59 37.0 2.74e-01 98.1% 24.3%
4995220 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 39.0 3.25e-01 72.2% 37.0%
4236584 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.59 38.0 3.94e-01 70.4% 72.0%
3856783 304.7.1.23 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › DUF4708 0.58 42.0 3.68e-01 79.6% 88.2%
4946604 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 40.0 3.73e-01 81.5% 57.1%
3544248 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 40.0 2.40e-01 75.9% 21.1%
3588519 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.57 37.0 2.63e-01 92.6% 21.8%
2585 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.56 36.0 2.82e-01 98.1% 27.2%
3803258 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.56 38.0 4.20e-01 72.2% 95.0%
3200626 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.56 37.0 2.57e-01 72.2% 18.5%
5032320 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 36.0 3.24e-01 70.4% 42.4%
4929882 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.55 36.0 3.44e-01 70.4% 55.4%
370599 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.54 39.0 2.83e-01 74.1% 32.9%
4956703 101.1.9.83 alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.53 36.0 3.51e-01 70.4% 70.0%
3958621 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 38.0 2.73e-01 75.9% 29.4%
4523817 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.53 35.0 2.52e-01 72.2% 19.5%
5062671 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 37.0 2.75e-01 74.1% 32.4%
3406421 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 35.0 3.50e-01 72.2% 70.0%
3278207 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 36.0 2.62e-01 74.1% 29.4%
4458248 304.8.1.97 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › CD34_antigen 0.51 35.0 2.92e-01 72.2% 52.7%
1066304 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.51 35.0 2.57e-01 74.1% 29.4%
4263825 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.51 34.0 2.44e-01 72.2% 20.0%
2589 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.50 36.0 2.72e-01 75.9% 34.3%
5029087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 3.09e-01 72.2% 58.7%