Back to structures

MZ923504.1__UIU47046.1__X__00032

Bact-Vir

MZ923504.1__UIU47046.1__X__00032

Identity

Accession:
MZ923504 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-95
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.78 71.0 4.64e-01 100.0% 31.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 5.61e-01 100.0% 66.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.70e-01 100.0% 79.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 68.0 4.93e-01 100.0% 49.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 67.0 4.94e-01 100.0% 50.0%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 67.0 4.93e-01 100.0% 50.3%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 66.0 5.14e-01 100.0% 59.7%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 62.0 4.62e-01 100.0% 52.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.67 60.0 5.04e-01 100.0% 62.9%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 4.55e-01 81.0% 96.2%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 54.0 5.32e-01 100.0% 88.7%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 55.0 4.19e-01 100.0% 54.6%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.63 49.0 3.81e-01 86.2% 85.9%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.62 47.0 3.82e-01 82.8% 55.4%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.20e-01 96.6% 26.2%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 53.0 4.24e-01 100.0% 93.4%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 4.14e-01 87.9% 63.7%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 3.74e-01 100.0% 39.3%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 47.0 3.50e-01 86.2% 85.3%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 3.89e-01 87.9% 59.2%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 3.93e-01 93.1% 87.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.55e-01 98.3% 85.7%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 47.0 3.53e-01 98.3% 33.7%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 45.0 4.37e-01 91.4% 76.1%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 44.0 2.78e-01 82.8% 49.2%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.87e-01 89.7% 91.9%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.36e-01 94.8% 77.8%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.47e-01 100.0% 65.1%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 2.90e-01 100.0% 79.4%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 40.0 2.94e-01 81.0% 33.5%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 48.0 3.63e-01 100.0% 80.7%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.56 46.0 3.86e-01 96.6% 92.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 3.69e-01 98.3% 96.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.52e-01 87.9% 55.5%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.55 37.0 2.99e-01 70.7% 67.7%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.52e-01 87.9% 78.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 37.0 2.92e-01 91.4% 30.3%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.06e-01 87.9% 35.4%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.54e-01 87.9% 53.9%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 39.0 2.94e-01 86.2% 97.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.10e-01 100.0% 87.3%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.29e-01 84.5% 77.8%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.14e-01 75.9% 92.3%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 42.0 3.17e-01 100.0% 85.7%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 43.0 3.19e-01 98.3% 94.6%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.46e-01 100.0% 85.7%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.51 40.0 3.57e-01 94.8% 90.7%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.51 42.0 3.44e-01 93.1% 79.3%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.51 33.0 2.49e-01 100.0% 26.2%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 34.0 3.01e-01 93.1% 42.2%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 41.0 2.76e-01 96.6% 87.2%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.15e-01 100.0% 57.8%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.15e-01 100.0% 68.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 64.0 6.01e-01 100.0% 71.4%
3491615 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.79 65.0 4.18e-01 100.0% 20.8%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 65.0 5.04e-01 100.0% 43.3%
3670066 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.77 71.0 5.07e-01 100.0% 47.1%
3510024 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.76 69.0 5.53e-01 100.0% 76.4%
3460287 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.75 68.0 4.89e-01 100.0% 45.0%
3521904 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 69.0 5.75e-01 100.0% 72.6%
3836457 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.75 68.0 4.95e-01 100.0% 49.3%
3334435 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.75 68.0 4.89e-01 100.0% 52.3%
3550047 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.74 67.0 4.74e-01 100.0% 52.9%
None 0.74 67.0 4.74e-01 100.0% 56.5%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 67.0 5.09e-01 100.0% 53.8%
3823515 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.74 67.0 4.84e-01 100.0% 47.1%
3798312 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 64.0 6.01e-01 100.0% 80.0%
3889197 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.73 65.0 4.64e-01 100.0% 54.7%
3629455 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.73 65.0 4.50e-01 100.0% 46.8%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 66.0 5.63e-01 100.0% 75.6%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 65.0 6.14e-01 100.0% 82.9%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 63.0 5.93e-01 100.0% 80.0%
3888254 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.36e-01 91.4% 93.3%
3501834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.52e-01 98.3% 81.2%
3373583 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 63.0 5.89e-01 100.0% 82.9%
3935716 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 61.0 5.62e-01 100.0% 76.0%
4563194 274.1.1.40 a+b two layers › Pili subunits › Pili subunits › Pili subunits › 17kDa_Anti_2 0.68 52.0 4.43e-01 82.8% 83.0%
4023161 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 4.19e-01 100.0% 53.3%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.68 60.0 5.20e-01 100.0% 76.7%
3826751 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 61.0 5.47e-01 100.0% 72.5%
3585538 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 57.0 4.79e-01 100.0% 56.0%
3793962 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 57.0 4.95e-01 100.0% 62.2%
3496594 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.66 51.0 3.22e-01 86.2% 26.9%
3471772 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.65 58.0 5.00e-01 100.0% 83.3%
5051718 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 54.0 3.34e-01 96.6% 27.9%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.65 54.0 4.91e-01 100.0% 68.8%
3437488 5.1.3.159 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.64 50.0 3.26e-01 91.4% 18.2%
3483729 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 45.0 3.58e-01 75.9% 72.5%
3684759 331.3.1.10 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.63 52.0 3.77e-01 91.4% 32.4%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.63 53.0 3.96e-01 100.0% 38.1%
4127161 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 49.0 4.16e-01 87.9% 54.0%
4569355 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 46.0 2.79e-01 86.2% 20.4%
4168380 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.60 50.0 3.92e-01 94.8% 81.5%
3381073 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.59 47.0 2.94e-01 87.9% 25.1%
3774016 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.59 46.0 2.93e-01 86.2% 27.9%
3498392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.83e-01 91.4% 71.4%
3744711 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.58 49.0 3.57e-01 100.0% 32.9%
3165037 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 47.0 3.56e-01 93.1% 77.3%
5030082 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 46.0 3.35e-01 91.4% 61.7%
4664932 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.58 46.0 3.69e-01 91.4% 72.0%
3672943 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.83e-01 72.4% 83.1%
1278471 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.57 47.0 3.90e-01 96.6% 88.6%
3592422 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 40.0 2.52e-01 77.6% 60.5%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 38.0 3.84e-01 70.7% 76.7%
4399545 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 47.0 3.87e-01 94.8% 78.1%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 43.0 4.22e-01 100.0% 84.6%
3867704 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 41.0 2.61e-01 82.8% 30.6%
4296288 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.54 42.0 3.57e-01 87.9% 54.3%
5053161 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 48.0 3.59e-01 100.0% 95.3%
3663874 2484.1.1.157 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.54 45.0 2.73e-01 93.1% 18.8%
3964928 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.54 43.0 3.96e-01 96.6% 92.9%
3850937 4004.1.1.10 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.53 44.0 3.25e-01 100.0% 65.6%
3750837 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.53 44.0 3.24e-01 100.0% 79.4%
3352475 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.53 36.0 3.34e-01 72.4% 65.3%
3614465 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.22e-01 100.0% 37.6%
4024738 220.1.1.243 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062 0.52 46.0 3.81e-01 100.0% 81.0%
3488611 383.1.2.0 few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin 0.52 33.0 3.82e-01 91.4% 95.0%
3760297 211.1.1.37 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Teneurin_ABD 0.52 42.0 3.44e-01 94.8% 84.2%
3862470 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.46e-01 100.0% 54.2%