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M

Euk-Vir

Southwest_carpet_python_virus

M__YP_009508489__Southwest_carpet_python_virus__2016402

Identity

Accession:
YP_009508489 ↗
Protein ID:
M
Kingdom:
euk

Quality

72.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Bornaviridae› Carbovirus› Southwest_carpet_python_virus

TaxID: 2016402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-127
PDB
Domain cluster: rep: hypothetical_protein_KM513_gp5__YP_010085029__Wuhan_sharpbelly_bornavirus__2116489__D21-123
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.88 79.0 7.27e-01 94.7% 80.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 29.0 3.17e-01 92.0% 55.4%
3c5iD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 34.0 4.00e-01 70.8% 90.8%
3aqoA02 3.30.1360.200 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 40.0 3.79e-01 77.9% 99.3%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.95e-01 72.6% 81.4%
7mxdX01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.63e-01 99.1% 68.1%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 4.07e-01 87.6% 92.4%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.78e-01 73.5% 87.6%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.51 33.0 3.67e-01 91.2% 82.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.58e-01 70.8% 89.9%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 44.0 3.29e-01 100.0% 89.2%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 37.0 4.09e-01 88.5% 96.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1109145 54.1.1.4 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › BDV_M 0.87 78.0 7.26e-01 94.7% 79.4%
3395447 220.1.1.162 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.58 45.0 4.02e-01 83.2% 85.6%
3587340 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 37.0 4.16e-01 71.7% 91.8%
4327703 11.1.1.577 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PFF1_C 0.54 38.0 3.30e-01 72.6% 94.3%
5032825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.79e-01 72.6% 76.5%
3487827 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 36.0 2.47e-01 72.6% 69.2%
3231860 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.75e-01 85.8% 74.2%
3575778 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.51 36.0 2.66e-01 73.5% 33.1%
3788453 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 36.0 2.70e-01 72.6% 82.5%