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M

Euk-Vir

Antarctic_penguin_virus_B

M__YP_009508513__Antarctic_penguin_virus_B__2006073

Identity

Accession:: YP_009508513 ↗
Protein ID:: M
Kingdom:: euk

Quality

84.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Orthoavulavirus› Antarctic_penguin_virus_B

TaxID: 2006073

Cluster

View cluster (63 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-17_185-340

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23765.2 best	Matrix_Paramyxo_C	117.6	6.00e-34	91.1%	93.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4g1gA02	2.70.20.60	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain	0.98	87.0	8.75e-01	90.5%	89.9%
1h2cA00	2.70.20.20	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain	0.65	45.0	5.18e-01	80.4%	96.0%
5d1pA01	3.10.450.740	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.61	23.0	3.59e-01	78.6%	86.6%
4g1lA01	2.70.20.50	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain	0.58	45.0	4.62e-01	99.4%	84.0%
1ex0A03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	33.0	3.88e-01	100.0%	87.7%
3p1vA01	2.60.40.3250	Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain	0.53	31.0	3.40e-01	100.0%	68.1%
1egjA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	28.0	3.46e-01	99.4%	84.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1155590	54.1.1.6 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Paramyxo_C	0.97	88.0	8.24e-01	92.9%	78.8%
2887044	54.1.1.6 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Paramyxo_C	0.90	67.0	6.90e-01	92.9%	79.7%
2321027	54.1.1.6 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Paramyxo_C	0.88	70.0	7.06e-01	92.9%	81.5%
863407	54.1.1.1 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix	0.60	44.0	4.64e-01	96.4%	84.3%
1725971	54.1.1.3 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › VP40	0.60	41.0	4.71e-01	88.1%	98.3%
2887049	54.1.1.1 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix	0.59	38.0	4.50e-01	89.9%	96.4%
4927485	211.1.1.1 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase	0.55	22.0	2.55e-01	76.8%	46.7%
3212628	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	33.0	3.80e-01	100.0%	81.6%
4973171	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.52	20.0	3.15e-01	73.8%	93.3%
4977926	211.1.1.24 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N	0.52	20.0	3.08e-01	73.8%	86.2%

D2 high residues 30-183

PDB

Domain cluster: rep: matrix_protein__YP_009094039__Pneumovirus_dog_Bari_100-12_ITA_2012__2482952__D2-120

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00661.29 best	Matrix_Paramyxo_N	136.6	8.20e-40	100.0%	85.7%