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M_protein
Euk-VirTomato_yellow_mottle-associated_virus
M_protein__YP_009352239__Tomato_yellow_mottle-associated_virus__1967841
Identity
- Accession:
- YP_009352239 ↗
- Protein ID:
- M_protein
- Kingdom:
- euk
Quality
72.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alphacytorhabdovirus›
Tomato_yellow_mottle-associated_virus
TaxID: 1967841
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-172
Domain cluster:
rep: matrix_protein__YP_009506259__Cacao_swollen_shoot_Togo_A_virus__1960254__D14-163
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.77 | 64.0 | 5.87e-01 | 100.0% | 68.9% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 40.0 | 4.55e-01 | 96.1% | 90.4% |
| 1kvdB00 | 3.30.44.10 | Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain | 0.59 | 32.0 | 3.83e-01 | 96.1% | 83.1% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 36.0 | 4.16e-01 | 92.2% | 98.9% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 28.0 | 3.35e-01 | 84.4% | 77.5% |
| 3mcsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.28e-01 | 98.4% | 44.9% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 39.0 | 4.11e-01 | 97.7% | 88.4% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 34.0 | 3.79e-01 | 100.0% | 84.5% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 31.0 | 3.86e-01 | 86.7% | 98.6% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 41.0 | 4.40e-01 | 99.2% | 100.0% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 4.15e-01 | 95.3% | 100.0% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 32.0 | 3.18e-01 | 100.0% | 55.8% |
| 1gqeA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.71e-01 | 100.0% | 69.0% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.93e-01 | 83.6% | 80.6% |
| 1zbtA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 38.0 | 3.55e-01 | 97.7% | 62.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3311358 | 304.8.1.67 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7377 | 0.62 | 36.0 | 3.67e-01 | 91.4% | 56.9% |
| 4506415 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.60 | 38.0 | 4.12e-01 | 97.7% | 76.0% |
| 4116209 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.58 | 36.0 | 4.16e-01 | 94.5% | 87.8% |
| 5046778 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.57 | 36.0 | 4.03e-01 | 95.3% | 81.0% |
| 3842059 | 11.1.1.927 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 | 0.57 | 48.0 | 4.86e-01 | 92.2% | 93.6% |
| 3576418 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.56 | 41.0 | 4.26e-01 | 100.0% | 84.3% |
| 4664239 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.56 | 35.0 | 4.08e-01 | 95.3% | 88.9% |
| 4503821 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.56 | 31.0 | 4.06e-01 | 88.3% | 100.0% |
| 4175825 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.56 | 28.0 | 3.80e-01 | 96.1% | 95.4% |
| 5043596 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.55 | 40.0 | 4.26e-01 | 92.2% | 85.2% |
| 4087557 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.52 | 47.0 | 3.57e-01 | 99.2% | 87.1% |
| 4947605 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.52 | 28.0 | 3.40e-01 | 82.0% | 82.5% |
| 4467707 | 304.116.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF | 0.52 | 38.0 | 4.06e-01 | 100.0% | 90.9% |
| 4255094 | 304.28.1.35 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Amnionless | 0.51 | 41.0 | 4.37e-01 | 93.8% | 98.2% |
| 4886317 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.51 | 38.0 | 4.10e-01 | 100.0% | 95.2% |
| None | — | 0.51 | 37.0 | 2.69e-01 | 75.0% | 72.6% | |
| 3933222 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.50 | 37.0 | 3.52e-01 | 77.3% | 83.2% |
| 4994432 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 30.0 | 3.30e-01 | 72.7% | 72.4% |