←Back to structures

M_protein

Euk-Vir

Siniperca_chuatsi_rhabdovirus

M_protein__YP_802939__Siniperca_chuatsi_rhabdovirus__373862

Identity

Accession:
YP_802939 ↗
Protein ID:
M_protein
Kingdom:
euk

Quality

70.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Siniperhavirus› Siniperca_chuatsi_rhabdovirus

TaxID: 373862

Cluster

View cluster (89 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-198
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06326.19 best Vesiculo_matrix 48.4 1.60e-12 100.0% 69.7%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.82 76.0 7.46e-01 100.0% 92.1%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.78 71.0 6.95e-01 100.0% 89.6%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 34.0 4.34e-01 71.1% 95.2%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.60 28.0 3.57e-01 75.7% 73.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 29.0 3.60e-01 77.6% 76.6%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 4.06e-01 83.6% 82.8%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 32.0 4.04e-01 71.7% 96.4%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 32.0 4.00e-01 71.7% 97.6%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.56 27.0 3.64e-01 88.2% 91.5%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.56 39.0 4.43e-01 77.6% 99.1%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 33.0 4.00e-01 72.4% 94.6%
5wpjA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.56 38.0 4.39e-01 77.6% 99.1%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.53 34.0 4.02e-01 77.0% 100.0%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 34.0 3.85e-01 73.0% 88.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 30.0 2.90e-01 71.7% 48.5%
1qm9A02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 28.0 3.52e-01 72.4% 88.8%
1f3vA00 3.30.70.680 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain 0.51 43.0 4.28e-01 91.4% 92.4%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 31.0 3.82e-01 82.9% 100.0%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 31.0 3.74e-01 74.3% 97.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2966642 845.1.1.2 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix 0.83 79.0 7.26e-01 100.0% 83.1%
169957 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.82 78.0 7.22e-01 100.0% 85.3%
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.78 71.0 6.95e-01 100.0% 89.6%
5036930 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.64 27.0 3.09e-01 73.0% 51.7%
4944966 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 30.0 4.02e-01 72.4% 97.3%
3923950 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 25.0 3.03e-01 73.0% 62.0%
3737558 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 30.0 3.76e-01 74.3% 84.4%
3575992 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 31.0 3.88e-01 71.1% 100.0%
4999750 304.43.1.0 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.52 32.0 3.87e-01 73.7% 96.8%
5372 304.49.1.1 ↗ a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD_N 0.51 43.0 4.28e-01 91.4% 92.4%
5021426 304.51.1.11 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N 0.51 34.0 3.99e-01 76.3% 97.1%
4857310 225.1.1.6 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.51 31.0 3.44e-01 77.6% 75.6%
3275398 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 27.0 3.27e-01 71.1% 80.0%
5051158 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.50 32.0 3.71e-01 93.4% 89.1%