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N13

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

N13__YP_010084629__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:
YP_010084629 ↗
Protein ID:
N13
Kingdom:
euk

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: rep: JM151__YP_238454__Macaca_fuscata_rhadinovirus__272551__D4-86
D2 high residues 93-170
PDB
Domain cluster: rep: ORF71__YP_001129429__Human_gammaherpesvirus_8__37296__D93-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01335.28 best DED 52.3 7.50e-14 98.7% 92.7%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.92 87.0 7.92e-01 100.0% 81.0%
4zbwA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.92 87.0 7.99e-01 100.0% 83.3%
4zbwA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.87 82.0 7.86e-01 100.0% 89.7%
1n3kA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.87 80.0 6.66e-01 100.0% 60.8%
3cl3A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.85 78.0 7.45e-01 100.0% 87.5%
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.82 76.0 7.08e-01 100.0% 95.7%
2bbrA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.81 68.0 6.52e-01 100.0% 79.8%
6ncvA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.80 73.0 6.90e-01 100.0% 91.2%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.77 71.0 6.49e-01 100.0% 85.0%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.77 69.0 6.62e-01 100.0% 94.4%
2a5yB01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.75 67.0 6.02e-01 100.0% 75.2%
4a2qA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.73 66.0 6.24e-01 100.0% 90.3%
1wxpA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.73 65.0 6.37e-01 100.0% 98.8%
2ms7A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.72 64.0 5.88e-01 100.0% 82.4%
1wmgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.71 63.0 6.00e-01 98.7% 95.6%
2kn6A02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 58.0 5.78e-01 100.0% 98.8%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 37.0 3.43e-01 71.8% 45.8%
1wj7A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 37.0 4.10e-01 87.2% 76.7%
2mn4A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 50.0 4.81e-01 100.0% 91.5%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 50.0 4.63e-01 100.0% 91.3%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 47.0 4.40e-01 100.0% 99.0%
2p35A02 1.10.150.290 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › S-adenosyl-L-methionine-dependent methyltransferases 0.55 39.0 4.06e-01 74.4% 95.7%
1zkrB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.54 38.0 3.24e-01 75.6% 97.9%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.49e-01 83.3% 57.0%
2mgyA01 1.20.1260.100 Mainly Alpha › Up-down Bundle › Ferritin › TspO/MBR protein 0.53 46.0 3.71e-01 100.0% 55.0%
7zcvA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 37.0 4.02e-01 98.7% 95.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3922024 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.94 90.0 8.55e-01 100.0% 89.8%
3881146 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.93 88.0 7.98e-01 100.0% 80.0%
159735 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.93 88.0 7.94e-01 100.0% 81.0%
4877739 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.92 87.0 7.46e-01 100.0% 68.7%
3568789 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.92 85.0 8.02e-01 97.4% 86.7%
3557006 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.91 86.0 7.95e-01 100.0% 82.1%
3527369 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.91 81.0 7.71e-01 100.0% 82.2%
3899612 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.91 84.0 7.92e-01 100.0% 84.4%
3549820 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.90 84.0 7.78e-01 100.0% 83.2%
3917135 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.90 84.0 7.95e-01 100.0% 87.8%
2722040 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.89 84.0 7.77e-01 100.0% 83.2%
3371 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.87 80.0 6.66e-01 100.0% 60.8%
151659 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.87 80.0 7.63e-01 100.0% 87.8%
1159065 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.85 78.0 7.42e-01 100.0% 86.5%
3524319 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.84 77.0 7.31e-01 100.0% 90.0%
3488586 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.80 74.0 7.02e-01 98.7% 88.9%
3899527 110.1.1.4 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN 0.79 72.0 6.75e-01 100.0% 86.3%
3404581 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.79 71.0 7.07e-01 100.0% 96.2%
3913395 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.76 68.0 6.60e-01 100.0% 88.2%
3478660 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.76 68.0 6.41e-01 100.0% 96.8%
3057440 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.74 67.0 6.38e-01 100.0% 91.1%
3502278 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.74 66.0 6.32e-01 100.0% 91.1%
3800925 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.71 63.0 5.94e-01 100.0% 88.4%
2771886 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.71 63.0 5.90e-01 100.0% 79.6%
3620818 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.70 62.0 5.84e-01 100.0% 85.3%
2392419 101.1.1.6 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Death 0.70 62.0 6.04e-01 100.0% 96.5%
3910094 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.69 61.0 5.82e-01 100.0% 92.5%
4954272 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 38.0 3.16e-01 76.9% 34.6%
4382041 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.58 33.0 3.56e-01 82.1% 64.6%
3821338 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.56 37.0 3.24e-01 85.9% 42.4%
3398736 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.50 36.0 3.12e-01 76.9% 83.1%