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N1R_p28-like_protein

Euk-Vir

Yaba_monkey_tumor_virus

N1R_p28-like_protein__NP_938394__Yaba_monkey_tumor_virus__38804

Identity

Accession:
NP_938394 ↗
Protein ID:
N1R_p28-like_protein
Kingdom:
euk

Quality

80.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba_monkey_tumor_virus

TaxID: 38804

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-123
PDB
Domain cluster: rep: Kila-N_RING_finger_protein__YP_009408558__NY_014_poxvirus__2025360__D5-161
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04383.20 best KilA-N 68.2 7.30e-19 93.8% 96.3%
D2 medium residues 135-231
PDB
Domain cluster: representative
Pfam (6)
AccessionNameScoreE-valueQ covHMM cov
PF13920.13 best zf-C3HC4_3 32.2 1.00e-07 58.8% 91.8%
PF13639.13 zf-RING_2 43.9 3.30e-11 50.5% 97.7%
PF14634.13 zf-RING_5 32.5 9.50e-08 50.5% 100.0%
PF13923.13 zf-C3HC4_2 29.0 1.10e-06 48.4% 100.0%
PF00097.32 zf-C3HC4 35.4 1.10e-08 47.4% 100.0%
PF13445.13 zf-RING_UBOX 31.5 1.90e-07 45.4% 100.0%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z6uA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 47.0 4.46e-01 73.2% 80.0%
2ecgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 40.0 4.50e-01 90.7% 78.7%
2kkxA00 3.30.40.80 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Effector protein NleG 0.65 46.0 4.58e-01 97.9% 69.6%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.55 28.0 3.43e-01 87.6% 78.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392386 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.86 52.0 6.40e-01 90.7% 92.3%
3266802 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.84 63.0 6.37e-01 80.4% 78.9%
3668278 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.83 63.0 5.65e-01 79.4% 80.0%
3779926 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.79 47.0 5.37e-01 96.9% 79.5%
3396437 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.77 48.0 5.29e-01 90.7% 76.2%
3244227 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.76 49.0 5.26e-01 90.7% 75.3%
3499932 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 47.0 5.37e-01 90.7% 84.0%
3347073 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.73 45.0 4.50e-01 90.7% 60.0%
3785325 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 50.0 5.18e-01 71.1% 82.2%
3263303 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.68 46.0 4.64e-01 90.7% 68.0%
3622713 376.1.1.78 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 0.67 49.0 4.97e-01 94.8% 77.9%
3262921 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 48.0 4.34e-01 93.8% 56.2%
3275196 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.65 46.0 4.08e-01 93.8% 52.6%
3269312 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 45.0 4.90e-01 93.8% 88.7%
3260447 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 47.0 4.30e-01 97.9% 59.2%
3255441 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.59 39.0 3.53e-01 71.1% 49.6%
3257904 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.57 44.0 4.37e-01 88.7% 79.0%