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N1R_p28-like_protein
Euk-VirMythimna_separata_entomopoxvirus_L
N1R_p28-like_protein__YP_008003518__Mythimna_separata_entomopoxvirus_L__1293572
Identity
- Accession:
- YP_008003518 ↗
- Protein ID:
- N1R_p28-like_protein
- Kingdom:
- euk
Quality
84.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Betaentomopoxvirus›
Mythimna_separata_entomopoxvirus_'L'
TaxID: 1293572
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-138
Domain cluster:
rep: ubiquitin_ligase__YP_005296343__Cotia_virus_SPAn232__930275__D17-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04383.20 best | KilA-N | 93.2 | 1.20e-26 | 88.0% | 96.3% |
D2
high
residues 221-322
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12299.14 best | DUF3627 | 27.5 | 3.90e-06 | 73.5% | 62.4% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 35.0 | 4.29e-01 | 92.2% | 91.8% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.60 | 41.0 | 4.49e-01 | 95.1% | 89.9% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.60 | 35.0 | 3.76e-01 | 89.2% | 67.0% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.59 | 35.0 | 4.28e-01 | 99.0% | 95.2% |
| 1uu1B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 35.0 | 3.30e-01 | 91.2% | 47.3% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 3.45e-01 | 95.1% | 62.2% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 3.13e-01 | 84.3% | 48.4% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 2.92e-01 | 85.3% | 39.7% |
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 48.0 | 4.87e-01 | 96.1% | 100.0% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.53 | 39.0 | 3.57e-01 | 89.2% | 56.6% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 33.0 | 3.38e-01 | 83.3% | 65.3% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.52 | 33.0 | 3.30e-01 | 98.0% | 60.2% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 39.0 | 4.24e-01 | 100.0% | 100.0% |
| 5hmpB02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 31.0 | 3.68e-01 | 75.5% | 93.8% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 2.99e-01 | 85.3% | 47.7% |
| 2o2xA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 40.0 | 3.28e-01 | 86.3% | 98.5% |
| 5h4eA01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.51 | 45.0 | 3.51e-01 | 100.0% | 48.9% |
| 5xyiK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 34.0 | 3.59e-01 | 87.3% | 77.8% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 32.0 | 3.37e-01 | 84.3% | 73.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989300 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.75 | 68.0 | 6.69e-01 | 99.0% | 97.3% |
| 3946107 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.72 | 62.0 | 6.40e-01 | 95.1% | 100.0% |
| 4123628 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.66 | 36.0 | 3.98e-01 | 78.4% | 66.3% |
| 5035126 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.66 | 37.0 | 4.54e-01 | 82.4% | 87.7% |
| 3950768 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 35.0 | 4.20e-01 | 81.4% | 84.6% |
| 4934946 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.62 | 42.0 | 4.65e-01 | 93.1% | 88.7% |
| 4431518 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.62 | 43.0 | 4.46e-01 | 95.1% | 76.8% |
| 4982942 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.62 | 42.0 | 4.28e-01 | 93.1% | 71.0% |
| 5006888 | 304.22.1.2 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › PF26257 | 0.62 | 37.0 | 4.28e-01 | 87.3% | 85.7% |
| 4309233 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 38.0 | 4.31e-01 | 92.2% | 84.0% |
| 4501296 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.61 | 42.0 | 4.62e-01 | 94.1% | 90.0% |
| 4073171 | 304.120.1.11 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › UreE_C | 0.61 | 40.0 | 4.12e-01 | 82.4% | 70.5% |
| 4995344 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.61 | 41.0 | 4.27e-01 | 93.1% | 74.7% |
| 5054618 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.61 | 42.0 | 4.62e-01 | 95.1% | 91.3% |
| 1114523 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.61 | 38.0 | 4.06e-01 | 92.2% | 73.3% |
| 4049541 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.59 | 41.0 | 3.99e-01 | 96.1% | 63.5% |
| 3414098 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.64e-01 | 93.1% | 95.3% |
| 4964213 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.57 | 38.0 | 4.15e-01 | 92.2% | 87.5% |
| 3533560 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.56 | 41.0 | 4.42e-01 | 95.1% | 92.9% |
| 4962686 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.55 | 45.0 | 3.66e-01 | 94.1% | 88.4% |
| 4379250 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.54 | 35.0 | 3.85e-01 | 85.3% | 86.7% |
| 3979813 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.54 | 38.0 | 4.20e-01 | 95.1% | 93.8% |
| 4222499 | 101.19.1.0 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN | 0.51 | 37.0 | 3.95e-01 | 100.0% | 87.8% |
| 3717644 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 33.0 | 3.70e-01 | 91.2% | 88.0% |
| 3984604 | 7558.1.1.10 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C | 0.51 | 38.0 | 3.95e-01 | 87.3% | 86.3% |
| 4182618 | 101.1.2.616 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27833 | 0.50 | 39.0 | 3.90e-01 | 95.1% | 81.9% |
| 4361463 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.50 | 39.0 | 4.02e-01 | 100.0% | 87.0% |
| 3973740 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 31.0 | 3.19e-01 | 86.3% | 62.0% |
D3
medium
residues 146-219
Domain cluster:
representative