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N1R_p28-like_protein

Euk-Vir

Adoxophyes_honmai_entomopoxvirus_L

N1R_p28-like_protein__YP_008003855__Adoxophyes_honmai_entomopoxvirus_L__1293540

Identity

Accession:
YP_008003855 ↗
Protein ID:
N1R_p28-like_protein
Kingdom:
euk

Quality

89.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Adoxophyes_honmai_entomopoxvirus_'L'

TaxID: 1293540

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-89
PDB
Domain cluster: rep: ubiquitin_ligase__YP_005296343__Cotia_virus_SPAn232__930275__D17-130
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04383.20 best KilA-N 30.3 4.50e-07 96.5% 80.4%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.73 61.0 5.81e-01 100.0% 77.8%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.63 59.0 5.37e-01 100.0% 85.2%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.60 46.0 4.09e-01 81.2% 69.4%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 34.0 3.57e-01 81.2% 68.5%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.55 37.0 4.14e-01 81.2% 100.0%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.57e-01 77.6% 64.4%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 33.0 3.07e-01 80.0% 45.3%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 4.18e-01 91.8% 97.1%
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 45.0 4.33e-01 97.6% 95.0%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 42.0 4.01e-01 95.3% 72.6%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.53 44.0 3.86e-01 92.9% 72.7%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 4.13e-01 87.1% 93.2%
6tgvA01 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.51 40.0 3.17e-01 83.5% 90.2%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.50 40.0 3.39e-01 91.8% 93.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3171223 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.79 64.0 5.93e-01 100.0% 70.2%
4572703 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.78 63.0 5.35e-01 100.0% 54.1%
3179613 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 60.0 5.94e-01 100.0% 83.3%
3197602 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.73 60.0 5.23e-01 100.0% 58.5%
3944712 101.1.9.40 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.70 57.0 5.33e-01 96.5% 72.4%
3785460 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 60.0 5.10e-01 100.0% 63.3%
5075145 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.63 41.0 4.53e-01 80.0% 86.2%
4942002 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.58 43.0 4.49e-01 81.2% 90.7%
5041921 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.57 36.0 3.81e-01 77.6% 72.0%
5066879 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.56 40.0 3.68e-01 87.1% 55.7%
5010782 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.64e-01 88.2% 59.0%
2816212 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.55 47.0 3.14e-01 95.3% 89.7%
3386797 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.53 40.0 3.03e-01 82.4% 92.0%
3486967 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 45.0 3.87e-01 100.0% 97.3%
3477161 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.52 44.0 3.79e-01 98.8% 97.3%
5078958 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.51 36.0 3.45e-01 82.4% 61.0%
3251263 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.51 36.0 2.46e-01 75.3% 63.3%
4978419 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 34.0 3.60e-01 82.4% 78.7%
4138755 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 36.0 3.17e-01 88.2% 48.1%
3810441 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.50 35.0 3.67e-01 81.2% 82.7%