N1R_p28-like_protein

Euk-Vir

Choristoneura_biennis_entomopoxvirus

N1R_p28-like_protein__YP_008004143__Choristoneura_biennis_entomopoxvirus__10288

Identity

77.9 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Choristoneura_biennis_entomopoxvirus

TaxID: 10288

View cluster (42 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-80

PDB

Domain cluster: rep: hypothetical_protein_AHEV_110__YP_008003933__Adoxophyes_honmai_entomopoxvirus_L__1293540__D2-60

D2 high residues 86-203

PDB

Domain cluster: rep: N1R_p28-like_protein__YP_008004623__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D80-201

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10553.15 best	MSV199	82.0	6.70e-23	100.0%	75.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lrrA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.61	27.0	3.36e-01	77.1%	64.3%
6qpqB00	1.10.10.580	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E	0.57	35.0	4.01e-01	91.5%	86.4%
2jtvA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	28.0	3.55e-01	89.0%	81.5%
3cuqA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	32.0	3.70e-01	81.4%	79.0%
2l48A00	3.30.70.2030	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	29.0	3.32e-01	85.6%	70.6%
3cuqB02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	31.0	3.58e-01	83.9%	81.2%
2cpmA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.53	27.0	3.01e-01	83.9%	58.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4947850	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	44.0	4.62e-01	94.9%	85.7%
4995570	131.1.1.3 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD	0.59	43.0	2.96e-01	77.1%	86.4%
3268092	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	34.0	3.38e-01	84.7%	54.2%
4025377	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	35.0	3.97e-01	85.6%	84.7%
4959358	304.131.1.0 ↗	a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain	0.56	36.0	3.91e-01	89.0%	80.0%
3426143	101.1.2.386 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_DRP	0.54	35.0	3.60e-01	89.8%	66.1%
3174904	2011.1.1.8 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28	0.53	37.0	2.71e-01	71.2%	31.9%
5014584	101.1.2.932 ↗	alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc	0.53	34.0	3.87e-01	86.4%	90.6%
3260870	320.1.1.0 ↗	a+b two layers › R3H domain-like › R3H domain › R3H domain	0.52	31.0	3.40e-01	94.9%	73.3%
3658918	327.11.2.1 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1	0.52	36.0	3.77e-01	82.2%	80.0%
4928753	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	35.0	3.86e-01	89.8%	88.4%

D3 high residues 268-404

PDB

Domain cluster: rep: MTG-like_gene_family_protein__YP_009001723__Anomala_cuprea_entomopoxvirus__62099__D191-355

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13455.13 best	MUG113	33.8	5.60e-08	66.4%	82.2%
PF10544.16	T5orf172	51.1	2.30e-13	65.7%	98.0%

D4 high residues 406-476

PDB

Domain cluster: rep: MTG-like_gene_family_protein__YP_009001487__Anomala_cuprea_entomopoxvirus__62099__D358-424