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N1R_p28-like_protein

Euk-Vir

Choristoneura_biennis_entomopoxvirus

N1R_p28-like_protein__YP_008004161__Choristoneura_biennis_entomopoxvirus__10288

Identity

Accession:: YP_008004161 ↗
Protein ID:: N1R_p28-like_protein
Kingdom:: euk

Quality

78.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Choristoneura_biennis_entomopoxvirus

TaxID: 10288

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-128

PDB

Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D8-117

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	43.1	7.70e-11	81.7%	80.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bm8A00	3.10.260.10	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain	0.69	50.0	5.29e-01	96.3%	83.8%
5vt9B01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.58	32.0	3.72e-01	88.1%	78.1%
2gtiA01	3.30.160.820	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like	0.54	24.0	3.00e-01	83.5%	67.2%
2e29A01	3.30.70.2280	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	32.0	3.72e-01	96.3%	89.5%
2p4bB02	3.30.200.100	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain	0.50	32.0	3.33e-01	91.7%	69.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4033119	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.83	53.0	5.57e-01	88.1%	71.0%
3968916	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.81	58.0	5.91e-01	96.3%	75.2%
5073619	101.1.9.16 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17	0.67	41.0	4.97e-01	78.9%	100.0%
4998593	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.67	49.0	4.89e-01	96.3%	73.9%
3984393	101.1.9.88 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha	0.65	46.0	4.65e-01	86.2%	72.7%
1316879	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.65	37.0	4.70e-01	96.3%	100.0%
3597887	376.1.3.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger	0.61	33.0	3.76e-01	77.1%	71.2%
3624148	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.59	44.0	4.40e-01	81.7%	76.4%
4003595	101.1.9.4 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno	0.59	47.0	4.50e-01	100.0%	72.9%
3700330	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.59	33.0	3.79e-01	77.1%	75.0%
4981944	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	32.0	3.53e-01	70.6%	81.2%
3735265	2003.1.3.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain	0.51	41.0	2.71e-01	87.2%	27.7%
3275333	101.1.2.37 ↗	alpha arrays › HTH › HTH › winged helix domain › E2F_TDP	0.50	40.0	2.95e-01	85.3%	66.0%

D2 high residues 227-347

PDB

Domain cluster: rep: N1R_p28-like_protein__YP_008004473__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D241-361

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12299.14 best	DUF3627	56.8	2.60e-15	59.5%	77.4%