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N1R_p28-like_protein

Euk-Vir

Choristoneura_biennis_entomopoxvirus

N1R_p28-like_protein__YP_008004169__Choristoneura_biennis_entomopoxvirus__10288

Identity

Accession:
YP_008004169 ↗
Protein ID:
N1R_p28-like_protein
Kingdom:
euk

Quality

79.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Choristoneura_biennis_entomopoxvirus

TaxID: 10288

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-142
PDB
Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D8-117
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02498.23 best Bro-N 70.6 2.00e-19 82.6% 99.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.68 51.0 5.61e-01 96.7% 96.0%
1pp8O00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 33.0 3.61e-01 72.7% 73.2%
4hplA00 3.10.260.40 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › BCL-6 corepressor, PCGF1 binding domain 0.54 44.0 4.54e-01 88.4% 93.8%
3afgB01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.51 33.0 3.75e-01 81.8% 89.7%
2zyzB01 3.40.1170.20 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain 0.51 34.0 3.89e-01 83.5% 94.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3179612 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 45.0 5.85e-01 82.6% 100.0%
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.77 61.0 6.39e-01 95.9% 90.9%
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.77 57.0 6.13e-01 93.4% 89.5%
3989255 101.1.9.141 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 0.74 41.0 3.69e-01 76.0% 40.6%
4126330 101.1.9.33 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536 0.74 42.0 3.96e-01 91.7% 46.9%
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.74 56.0 6.13e-01 89.3% 95.0%
3588934 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 39.0 5.02e-01 71.9% 96.9%
4954530 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.69 57.0 5.84e-01 89.3% 99.1%
3984393 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.69 54.0 5.62e-01 85.1% 90.0%
3944712 101.1.9.40 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › P22_AR_N 0.69 55.0 5.92e-01 88.4% 98.1%
3171223 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.68 52.0 5.56e-01 97.5% 91.3%
4572703 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.67 51.0 4.97e-01 96.7% 71.1%
3885964 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 59.0 5.58e-01 93.4% 85.7%
3197602 101.1.9.6 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.67 51.0 5.04e-01 96.7% 73.8%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 46.0 4.72e-01 81.0% 75.7%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.64 55.0 5.17e-01 94.2% 76.0%
4032453 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.63 47.0 5.17e-01 90.9% 98.9%
3947416 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.62 49.0 5.15e-01 87.6% 91.8%
3983963 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.62 49.0 5.22e-01 90.9% 98.1%
4546946 101.1.9.25 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › INI1_DNA-bd 0.61 47.0 4.81e-01 85.1% 84.3%
3893451 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.60 45.0 4.77e-01 82.6% 90.5%
3941747 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.60 49.0 5.13e-01 86.8% 97.3%
3393393 101.1.9.23 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TdIF1_2nd 0.60 41.0 4.20e-01 70.2% 72.5%
3624148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 45.0 4.68e-01 81.0% 87.3%
4040255 101.1.9.92 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF5525 0.57 44.0 3.97e-01 81.0% 95.2%
3861402 148.1.1.86 ↗ alpha arrays › Histone-like › Histone-related › Histone › DUF5525 0.56 43.0 3.93e-01 81.8% 95.2%
3495406 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 44.0 4.74e-01 85.1% 98.1%
4427444 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.53 34.0 2.91e-01 85.1% 37.5%
5038039 4271.1.1.0 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.53 33.0 2.79e-01 85.1% 33.3%
4935111 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.52 32.0 2.82e-01 85.1% 37.9%
5082216 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.51 32.0 2.73e-01 91.7% 36.5%
D2 high residues 147-209
PDB
Domain cluster: rep: N1R_p28-like_protein__YP_008004170__Choristoneura_biennis_entomopoxvirus__10288__D139-212
D3 high residues 216-343
PDB
Domain cluster: rep: N1R_p28-like_protein__YP_008003824__Adoxophyes_honmai_entomopoxvirus_L__1293540__D227-353
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12299.14 best DUF3627 53.2 3.50e-14 60.2% 80.7%