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N1R_p28-like_protein
Euk-VirChoristoneura_biennis_entomopoxvirus
N1R_p28-like_protein__YP_008004172__Choristoneura_biennis_entomopoxvirus__10288
Identity
- Accession:
- YP_008004172 ↗
- Protein ID:
- N1R_p28-like_protein
- Kingdom:
- euk
Quality
81.2
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Betaentomopoxvirus›
Choristoneura_biennis_entomopoxvirus
TaxID: 10288
Cluster
View cluster (19 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-115
Domain cluster:
rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D8-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 45.9 | 1.00e-11 | 77.7% | 80.2% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.59 | 50.0 | 4.96e-01 | 97.1% | 89.6% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 35.0 | 3.77e-01 | 72.8% | 70.1% |
| 2gtiA01 | 3.30.160.820 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like | 0.53 | 24.0 | 3.00e-01 | 79.6% | 67.2% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 40.0 | 3.14e-01 | 87.4% | 85.4% |
| 1pp0B00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.51 | 38.0 | 3.12e-01 | 78.6% | 100.0% |
| 1fbqA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.72e-01 | 75.7% | 85.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989255 | 101.1.9.141 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 | 0.86 | 46.0 | 3.90e-01 | 70.9% | 34.4% |
| 4033119 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.82 | 55.0 | 5.66e-01 | 83.5% | 71.0% |
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.80 | 59.0 | 5.91e-01 | 93.2% | 75.2% |
| 4954530 | 101.1.9.143 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM | 0.71 | 56.0 | 5.44e-01 | 84.5% | 84.3% |
| 4998593 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.68 | 52.0 | 5.09e-01 | 93.2% | 73.9% |
| 4025274 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 34.0 | 3.93e-01 | 84.5% | 72.0% |
| 3525074 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.62 | 51.0 | 5.37e-01 | 90.3% | 100.0% |
| 3888996 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.61 | 51.0 | 5.29e-01 | 97.1% | 96.8% |
| 3480621 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.61 | 50.0 | 5.23e-01 | 97.1% | 96.8% |
| 4003595 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.61 | 51.0 | 4.74e-01 | 97.1% | 72.9% |
| 3861402 | 148.1.1.86 ↗ | alpha arrays › Histone-like › Histone-related › Histone › DUF5525 | 0.60 | 47.0 | 4.06e-01 | 85.4% | 92.1% |
| 4040255 | 101.1.9.92 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF5525 | 0.59 | 47.0 | 4.11e-01 | 88.3% | 92.1% |
| 4993189 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 27.0 | 3.39e-01 | 93.2% | 75.0% |
| 4507561 | 3012.1.1.9 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › SecD_1st | 0.54 | 34.0 | 2.99e-01 | 90.3% | 41.9% |
| 4951019 | 101.1.2.896 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2551 | 0.53 | 35.0 | 3.62e-01 | 74.8% | 71.6% |
| 3430077 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.52 | 33.0 | 3.92e-01 | 90.3% | 97.1% |
| 3831826 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.52 | 35.0 | 3.77e-01 | 81.6% | 88.7% |
| 4431518 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.51 | 34.0 | 3.54e-01 | 82.5% | 72.6% |
| 4934946 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.51 | 34.0 | 3.74e-01 | 81.6% | 87.5% |
| 4942419 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.51 | 33.0 | 3.67e-01 | 81.6% | 86.3% |
| 4102573 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.50 | 34.0 | 3.72e-01 | 81.6% | 88.7% |
| 4345475 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.50 | 34.0 | 3.51e-01 | 81.6% | 73.7% |
| 4932760 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.50 | 34.0 | 3.83e-01 | 81.6% | 97.3% |
| 4127516 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.50 | 33.0 | 3.69e-01 | 81.6% | 93.3% |
D2
high
residues 157-214
D3
high
residues 224-347
Domain cluster:
rep: N1R_p28-like_protein__YP_008004473__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D241-361
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12299.14 best | DUF3627 | 56.1 | 4.50e-15 | 58.9% | 76.3% |