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N1R_p28-like_protein
Euk-VirChoristoneura_biennis_entomopoxvirus
N1R_p28-like_protein__YP_008004189__Choristoneura_biennis_entomopoxvirus__10288
Identity
- Accession:
- YP_008004189 ↗
- Protein ID:
- N1R_p28-like_protein
- Kingdom:
- euk
Quality
78.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Betaentomopoxvirus›
Choristoneura_biennis_entomopoxvirus
TaxID: 10288
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 173-294
Domain cluster:
rep: N1R_p28-like_protein__YP_008003824__Adoxophyes_honmai_entomopoxvirus_L__1293540__D227-353
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12299.14 best | DUF3627 | 44.9 | 1.40e-11 | 57.4% | 87.1% |
D2
medium
residues 6-98
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04383.20 best | KilA-N | 38.6 | 1.10e-09 | 53.8% | 41.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 35.0 | 3.22e-01 | 90.3% | 47.0% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 42.0 | 3.38e-01 | 93.5% | 81.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4128137 | 103.15.1.3 ↗ | alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23, MRP-S25 | 0.64 | 38.0 | 3.22e-01 | 100.0% | 37.8% |
| 4001461 | 109.4.1.1318 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › N1221, DUF3402 | 0.58 | 48.0 | 2.93e-01 | 94.6% | 62.6% |
| 5017728 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.52 | 35.0 | 3.29e-01 | 88.2% | 56.6% |
| 4536670 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.52 | 43.0 | 3.82e-01 | 93.5% | 63.8% |
D3
medium
residues 118-172
Domain cluster:
representative