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N1R_p28-like_protein

Euk-Vir

Choristoneura_rosaceana_entomopoxvirus_L

N1R_p28-like_protein__YP_008004473__Choristoneura_rosaceana_entomopoxvirus_L__1293539

Identity

Accession:: YP_008004473 ↗
Protein ID:: N1R_p28-like_protein
Kingdom:: euk

Quality

78.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Choristoneura_rosaceana_entomopoxvirus_'L'

TaxID: 1293539

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-151

PDB

Domain cluster: rep: MH268168.1__AWY10457.1__PFP1_07__00007__D2-95

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02498.23 best	Bro-N	60.0	4.00e-16	81.7%	99.0%

D2 high residues 241-361

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12299.14 best	DUF3627	59.6	3.80e-16	59.5%	77.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1oltA02	1.10.10.920	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.59	38.0	4.54e-01	97.5%	97.5%
1ywlA00	3.40.1440.10	Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease	0.59	42.0	4.68e-01	100.0%	93.8%
4py5A02	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.51	36.0	3.07e-01	72.7%	98.5%
1iarB02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	26.0	2.93e-01	96.7%	60.9%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3735748	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.63	51.0	4.52e-01	98.3%	61.2%
4138617	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.60	48.0	4.03e-01	100.0%	50.2%
4160981	821.1.1.1 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG	0.59	54.0	4.48e-01	100.0%	58.6%
5008102	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.58	43.0	4.62e-01	92.6%	92.0%
3885877	11.1.6.5 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND	0.57	49.0	4.76e-01	98.3%	83.8%
3560945	11.1.6.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain	0.56	51.0	4.71e-01	98.3%	89.7%
3894724	11.1.6.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain	0.56	51.0	4.75e-01	98.3%	95.3%
3572784	11.1.6.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain	0.56	51.0	4.66e-01	98.3%	92.3%
3907256	11.1.6.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain	0.55	50.0	4.66e-01	98.3%	90.7%
4944477	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.53	41.0	3.58e-01	83.5%	53.5%
3746682	225.1.1.7 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3	0.53	39.0	3.04e-01	78.5%	86.7%
3929433	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.52	33.0	3.48e-01	83.5%	70.9%
1549209	264.1.1.2 ↗	beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A	0.51	35.0	3.37e-01	96.7%	59.7%
3621304	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	30.0	3.48e-01	88.4%	82.4%

D3 medium residues 152-218

PDB

Domain cluster: rep: N1R_p28-like_protein__YP_008004170__Choristoneura_biennis_entomopoxvirus__10288__D139-212