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N1R_p28-like_protein

Euk-Vir

Choristoneura_rosaceana_entomopoxvirus_L

N1R_p28-like_protein__YP_008004619__Choristoneura_rosaceana_entomopoxvirus_L__1293539

Identity

Accession:
YP_008004619 ↗
Protein ID:
N1R_p28-like_protein
Kingdom:
euk

Quality

83.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Choristoneura_rosaceana_entomopoxvirus_'L'

TaxID: 1293539

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: rep: hypothetical_protein_AHEV_110__YP_008003933__Adoxophyes_honmai_entomopoxvirus_L__1293540__D2-60
D2 high residues 264-370
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 55.2 1.10e-14 85.0% 96.9%
PF13455.13 MUG113 37.1 5.30e-09 69.2% 97.3%
D3 high residues 391-463
PDB
Domain cluster: rep: MTG-like_gene_family_protein__YP_009001487__Anomala_cuprea_entomopoxvirus__62099__D358-424
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 6.02e-01 90.4% 91.8%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.64e-01 89.0% 98.8%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 6.32e-01 98.6% 98.6%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.70 49.0 4.13e-01 90.4% 44.6%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.70e-01 91.8% 93.1%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.67 57.0 5.67e-01 98.6% 92.0%
3ua3A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 53.0 4.07e-01 100.0% 37.0%
4m88A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 42.0 3.40e-01 91.8% 32.9%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.45e-01 91.8% 98.5%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 51.0 4.92e-01 89.0% 75.6%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.44e-01 86.3% 62.6%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.64 42.0 3.93e-01 76.7% 55.1%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.68e-01 86.3% 74.2%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.64 52.0 3.93e-01 91.8% 76.8%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.89e-01 89.0% 92.8%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.60e-01 86.3% 73.6%
2fqxA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 45.0 3.40e-01 98.6% 30.8%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.79e-01 90.4% 79.3%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.97e-01 89.0% 100.0%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.99e-01 89.0% 100.0%
3nvwA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.61 42.0 4.27e-01 100.0% 73.0%
3i5xA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 3.40e-01 100.0% 25.4%
5dxfB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 45.0 3.10e-01 100.0% 22.6%
3d3aA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 46.0 3.09e-01 91.8% 21.8%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.54e-01 91.8% 82.2%
2pqmB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.87e-01 100.0% 22.7%
4hdrB02 3.40.50.10210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain 0.58 52.0 3.56e-01 100.0% 42.4%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 46.0 3.80e-01 91.8% 66.7%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.57 40.0 3.49e-01 89.0% 45.5%
7caqA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.57 50.0 3.66e-01 100.0% 64.2%
1ltlA01 3.30.1640.10 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 0.57 42.0 3.97e-01 80.8% 85.6%
2iyvA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 37.0 2.89e-01 100.0% 29.1%
2j6xH00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 2.90e-01 91.8% 20.4%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.54 45.0 3.35e-01 97.3% 68.5%
2jzdA01 3.40.220.20 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Nsp3, SUD-M subdomain 0.54 36.0 3.12e-01 91.8% 40.8%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.53 44.0 3.21e-01 95.9% 87.8%
2r2iA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 40.0 3.74e-01 87.7% 75.3%
5q22A02 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 43.0 3.46e-01 97.3% 55.4%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048418 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 58.0 6.15e-01 100.0% 90.8%
4372915 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.73 54.0 3.27e-01 100.0% 12.0%
5045142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.81e-01 89.0% 89.7%
3312445 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.72 60.0 4.96e-01 100.0% 51.5%
3539574 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.03e-01 100.0% 51.1%
3739376 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.72 61.0 5.57e-01 100.0% 70.4%
3703720 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.71 58.0 5.20e-01 100.0% 62.9%
3290705 101.1.2.81 ↗ alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.71 59.0 5.62e-01 90.4% 78.8%
4169387 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.71 48.0 4.85e-01 91.8% 69.3%
None — 0.70 58.0 5.81e-01 90.4% 88.0%
3598016 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.85e-01 94.5% 90.0%
4575461 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.70 57.0 5.34e-01 98.6% 72.2%
4656329 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.70 48.0 5.28e-01 91.8% 94.5%
4310740 101.1.2.81 ↗ alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.70 57.0 5.58e-01 90.4% 83.7%
4941280 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.69 58.0 4.71e-01 93.2% 51.4%
4667980 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.74e-01 91.8% 89.3%
5012902 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.69 57.0 5.68e-01 91.8% 100.0%
3611590 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.20e-01 89.0% 84.4%
5054311 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.69 54.0 5.13e-01 87.7% 78.7%
5007881 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.68 57.0 5.31e-01 91.8% 94.4%
3392468 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.68 56.0 4.94e-01 100.0% 60.9%
3805545 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.68 60.0 5.00e-01 100.0% 70.8%
5042147 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.68 55.0 5.37e-01 90.4% 88.7%
3472278 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.67 53.0 5.26e-01 86.3% 97.3%
4940618 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 56.0 5.47e-01 93.2% 90.0%
4927412 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.34e-01 91.8% 83.5%
3280723 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.67 45.0 4.24e-01 75.3% 56.7%
3554511 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.67 53.0 5.20e-01 89.0% 92.5%
5082736 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 5.08e-01 93.2% 97.9%
5072522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 5.17e-01 93.2% 98.2%
3606219 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 5.33e-01 86.3% 100.0%
4928803 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.66 54.0 5.15e-01 90.4% 83.5%
3593317 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.20e-01 97.3% 87.1%
3858057 101.42.1.1 ↗ alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.66 50.0 4.97e-01 90.4% 80.0%
3404571 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.65 53.0 5.18e-01 91.8% 92.5%
3489856 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.16e-01 90.4% 87.5%
3283805 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.65 51.0 5.22e-01 91.8% 88.6%
4024456 101.1.2.663 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7602 0.65 54.0 5.13e-01 95.9% 94.4%
4932456 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.87e-01 91.8% 69.0%
4948021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.17e-01 91.8% 88.7%
5010736 101.1.16.0 ↗ alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain 0.65 50.0 5.27e-01 98.6% 96.9%
168668 101.1.2.214 ↗ alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.64 50.0 4.41e-01 86.3% 56.4%
3789380 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.58e-01 100.0% 94.7%
4987460 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.63 50.0 4.88e-01 86.3% 80.0%
5050499 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.62 52.0 4.99e-01 93.2% 83.5%
4474453 101.1.2.104 ↗ alpha arrays › HTH › HTH › winged helix domain › SelB-wing_3 0.62 55.0 4.65e-01 100.0% 81.6%
4079413 2002.1.1.41 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase 0.62 55.0 3.54e-01 97.3% 74.0%
5056718 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 51.0 4.42e-01 93.2% 61.0%
3325314 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.61 49.0 5.05e-01 90.4% 98.6%
4945071 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 5.10e-01 89.0% 100.0%
4651301 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 49.0 4.24e-01 89.0% 64.3%
4943929 2004.1.1.277 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HerA_C 0.61 49.0 3.19e-01 93.2% 27.6%
3479146 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 47.0 3.69e-01 90.4% 42.9%
3748372 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 3.67e-01 100.0% 43.4%
5062558 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.59 45.0 4.55e-01 84.9% 86.7%
3589866 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.59 48.0 4.58e-01 90.4% 80.0%
4165105 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.58 48.0 4.59e-01 91.8% 78.8%
5037497 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.58 48.0 3.51e-01 100.0% 31.6%
4282998 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.95e-01 89.0% 55.8%
4199769 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 46.0 3.34e-01 90.4% 31.8%
3279376 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 46.0 4.26e-01 90.4% 71.6%
5040640 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.56 45.0 4.46e-01 90.4% 83.7%
5038536 3003.1.1.1 ↗ a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.56 46.0 4.38e-01 95.9% 95.6%
4019840 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.52 45.0 3.83e-01 97.3% 62.5%
3901020 148.1.1.3 ↗ alpha arrays › Histone-like › Histone-related › Histone › Histone,Histone_H2A_C 0.51 42.0 3.31e-01 98.6% 43.9%
D4 medium residues 74-259
PDB
Domain cluster: rep: N1R_p28-like_protein__YP_008004623__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D80-201
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10553.15 best MSV199 137.8 3.70e-40 75.8% 99.2%