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N1R_p28-like_protein

Euk-Vir

Choristoneura_rosaceana_entomopoxvirus_L

N1R_p28-like_protein__YP_008004623__Choristoneura_rosaceana_entomopoxvirus_L__1293539

Identity

Accession:: YP_008004623 ↗
Protein ID:: N1R_p28-like_protein
Kingdom:: euk

Quality

73.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Choristoneura_rosaceana_entomopoxvirus_'L'

TaxID: 1293539

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-69

PDB

D2 high residues 80-201

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10553.15 best	MSV199	92.3	4.40e-26	100.0%	79.5%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2khdA00	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	35.0	3.70e-01	82.8%	65.7%
2jtvA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	28.0	3.48e-01	87.7%	80.0%
5mmjh01	3.30.1370.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.57	30.0	3.60e-01	82.8%	78.7%
3wx4A00	3.30.70.2770	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	35.0	3.85e-01	78.7%	76.5%
3u1kB04	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.55	30.0	3.62e-01	79.5%	86.1%
4i0wA00	3.30.70.2980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	33.0	3.64e-01	90.2%	79.3%
1t0tV02	3.30.70.1030	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1	0.53	33.0	3.46e-01	79.5%	68.5%
2fphX01	3.30.1370.160	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.52	26.0	3.11e-01	78.7%	71.4%
3bh7B02	3.30.70.141	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain	0.52	35.0	3.59e-01	79.5%	70.2%
1rjjA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	32.0	3.37e-01	82.0%	68.5%
3he0B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	35.0	3.07e-01	70.5%	55.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4965059	101.1.2.911 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF5827	0.59	34.0	4.07e-01	79.5%	90.7%
4025377	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	35.0	4.06e-01	84.4%	84.7%
4126441	320.2.1.1 ↗	a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8	0.58	30.0	3.85e-01	81.1%	96.7%
5043656	304.116.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor	0.57	36.0	4.06e-01	79.5%	82.1%
4105291	320.2.1.1 ↗	a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8	0.56	30.0	3.74e-01	82.8%	92.3%
4474140	320.2.1.1 ↗	a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8	0.55	29.0	3.60e-01	82.0%	89.2%
4518870	320.2.1.1 ↗	a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8	0.54	29.0	3.61e-01	85.2%	92.3%
5046059	327.11.2.83 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C	0.54	26.0	3.51e-01	79.5%	98.2%
4583415	320.2.1.1 ↗	a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8	0.54	32.0	3.76e-01	86.1%	92.0%
5032746	3016.1.1.6 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › DegT_DnrJ_EryC1	0.53	35.0	4.15e-01	78.7%	98.8%
3784221	7579.1.1.42 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4	0.51	38.0	2.91e-01	77.0%	63.2%
3587271	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	39.0	3.62e-01	84.4%	63.2%
3602560	304.111.1.1 ↗	a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C	0.51	38.0	3.45e-01	79.5%	71.1%

D3 high residues 262-400

PDB

Domain cluster: rep: MTG-like_gene_family_protein__YP_009001723__Anomala_cuprea_entomopoxvirus__62099__D191-355

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13455.13 best	MUG113	33.8	5.90e-08	65.5%	82.2%
PF10544.16	T5orf172	51.0	2.40e-13	64.8%	98.0%

D4 high residues 402-472

PDB