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N1R_p28_family_protein
Euk-VirPenguinpox_virus
N1R_p28_family_protein__YP_009046153__Penguinpox_virus__648998
Identity
- Accession:
- YP_009046153 ↗
- Protein ID:
- N1R_p28_family_protein
- Kingdom:
- euk
Quality
83.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Avipoxvirus›
Penguinpox_virus
TaxID: 648998
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-145
Domain cluster:
rep: ubiquitin_ligase__YP_005296343__Cotia_virus_SPAn232__930275__D17-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04383.20 best | KilA-N | 72.0 | 5.00e-20 | 82.5% | 96.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.73 | 50.0 | 5.85e-01 | 88.8% | 100.0% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 32.0 | 3.95e-01 | 99.3% | 82.2% |
| 3vsmA03 | 2.60.40.4340 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 28.0 | 3.34e-01 | 93.7% | 63.8% |
| 4btfA03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 36.0 | 3.99e-01 | 76.9% | 84.8% |
| 3kmuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 31.0 | 3.74e-01 | 88.1% | 89.7% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.53 | 23.0 | 3.29e-01 | 79.7% | 90.0% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.53 | 25.0 | 2.99e-01 | 91.6% | 62.1% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.50 | 36.0 | 3.87e-01 | 80.4% | 86.0% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.50 | 25.0 | 3.19e-01 | 90.9% | 83.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3197602 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.72 | 55.0 | 5.73e-01 | 99.3% | 86.2% |
| 3171223 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.70 | 50.0 | 5.72e-01 | 93.7% | 100.0% |
| 3992641 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.70 | 30.0 | 4.08e-01 | 96.5% | 78.6% |
| 3740323 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.68 | 52.0 | 5.74e-01 | 95.8% | 99.1% |
| 3619889 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.67 | 29.0 | 3.97e-01 | 97.2% | 80.0% |
| None | — | 0.66 | 29.0 | 1.84e-01 | 81.1% | 8.2% | |
| 3783314 | 101.1.9.6 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N | 0.64 | 56.0 | 5.55e-01 | 94.4% | 97.3% |
| 3785460 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 52.0 | 5.33e-01 | 90.2% | 92.1% |
| 3437923 | 12.1.1.87 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SWIM | 0.61 | 26.0 | 3.89e-01 | 97.2% | 93.3% |
| 3210934 | 77.3.1.7 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 | 0.60 | 26.0 | 3.01e-01 | 81.1% | 53.3% |
| 2410067 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.58 | 22.0 | 3.28e-01 | 87.4% | 78.7% |