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N1R_p28_family_protein

Euk-Vir

Pigeonpox_virus

N1R_p28_family_protein__YP_009046385__Pigeonpox_virus__10264

Identity

Accession:
YP_009046385 ↗
Protein ID:
N1R_p28_family_protein
Kingdom:
euk

Quality

71.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Avipoxvirus› Pigeonpox_virus

TaxID: 10264

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-148
PDB
Domain cluster: rep: ubiquitin_ligase__YP_005296343__Cotia_virus_SPAn232__930275__D17-130
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04383.20 best KilA-N 69.6 2.60e-19 83.1% 99.1%
D2 medium residues 149-215
PDB
D3 medium residues 216-309
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13639.13 best zf-RING_2 34.3 3.20e-08 58.5% 97.7%
PF00097.32 zf-C3HC4 31.0 2.60e-07 55.3% 100.0%
PF13445.13 zf-RING_UBOX 27.1 4.60e-06 53.2% 100.0%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ztgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.80 50.0 5.07e-01 72.3% 64.1%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 42.0 4.83e-01 71.3% 71.4%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 48.0 5.88e-01 74.5% 98.3%
1t1hA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 46.0 5.03e-01 71.3% 71.8%
1jm7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 47.0 4.60e-01 72.3% 57.3%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 49.0 4.93e-01 72.3% 70.2%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 29.0 2.87e-01 72.3% 43.3%
4o01D01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 40.0 3.08e-01 100.0% 33.3%
1vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.55 39.0 3.29e-01 73.4% 95.0%
3rnrB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 36.0 2.80e-01 72.3% 64.9%
2l1iA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 31.0 2.91e-01 93.6% 48.4%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3891072 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.93 77.0 7.71e-01 85.1% 86.3%
3412805 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.93 74.0 7.85e-01 83.0% 92.9%
3305271 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.92 65.0 6.66e-01 72.3% 88.9%
3416822 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.92 73.0 7.92e-01 81.9% 97.5%
3906009 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.91 81.0 7.92e-01 92.6% 89.0%
3659589 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.90 57.0 6.91e-01 71.3% 93.8%
3253098 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.89 80.0 7.97e-01 92.6% 92.6%
3766928 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.88 84.0 7.48e-01 100.0% 78.2%
None — 0.88 56.0 5.74e-01 72.3% 67.8%
3529744 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.88 83.0 7.43e-01 100.0% 77.6%
3809021 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.88 72.0 7.34e-01 85.1% 94.4%
3675694 109.4.1.1591 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box 0.87 55.0 3.15e-01 72.3% 7.5%
4588532 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.86 54.0 5.89e-01 70.2% 75.0%
3668278 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.86 73.0 6.41e-01 89.4% 69.2%
3294924 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.86 54.0 5.47e-01 72.3% 64.2%
3749618 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.85 55.0 5.38e-01 72.3% 62.0%
4488994 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.84 54.0 6.43e-01 71.3% 93.8%
None — 0.84 52.0 5.86e-01 71.3% 80.0%
3879022 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.83 54.0 5.45e-01 72.3% 66.3%
3888382 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.83 51.0 5.25e-01 72.3% 65.6%
3893740 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.82 50.0 4.70e-01 71.3% 51.8%
3192722 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.81 51.0 5.80e-01 74.5% 84.3%
3906153 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.81 52.0 5.32e-01 72.3% 67.8%
3400662 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.81 53.0 5.04e-01 72.3% 57.3%
3927096 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.81 51.0 5.49e-01 71.3% 75.0%
3614897 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.80 54.0 4.79e-01 77.7% 50.8%
3481138 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 59.0 6.40e-01 93.6% 92.5%
3237398 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.78 55.0 5.38e-01 72.3% 69.0%
3840946 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.78 50.0 5.38e-01 71.3% 76.2%
3167141 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.78 51.0 6.04e-01 70.2% 96.9%
4248233 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.77 53.0 5.36e-01 72.3% 71.0%
3691267 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.77 52.0 5.32e-01 77.7% 72.2%
4566061 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 49.0 4.77e-01 72.3% 59.0%
3623367 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.76 48.0 4.80e-01 70.2% 63.2%
3241153 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 49.0 4.01e-01 87.2% 38.7%
3636256 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 67.0 6.83e-01 93.6% 98.9%
3711823 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 48.0 4.36e-01 71.3% 49.6%
3196969 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.75 52.0 6.02e-01 81.9% 97.1%
3690656 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.74 51.0 5.01e-01 72.3% 66.0%
3686300 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.74 48.0 5.71e-01 70.2% 96.9%
3718286 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.74 45.0 5.14e-01 72.3% 82.9%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.74 52.0 5.52e-01 94.7% 81.2%
4243252 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.73 57.0 5.73e-01 90.4% 80.0%
3567222 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.73 48.0 5.09e-01 71.3% 74.1%
4028785 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 50.0 5.38e-01 78.7% 82.5%
3561251 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 47.0 5.38e-01 70.2% 88.6%
4180025 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 56.0 5.29e-01 90.4% 69.1%
3711991 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 44.0 3.99e-01 72.3% 44.6%
3684391 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 51.0 5.28e-01 90.4% 76.7%
3714165 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 54.0 4.15e-01 77.7% 38.9%
3213657 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 52.0 5.62e-01 78.7% 90.0%
4405870 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 58.0 5.45e-01 90.4% 72.7%
3793771 376.1.1.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Nse 0.71 48.0 5.00e-01 72.3% 75.0%
3343337 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 51.0 5.38e-01 94.7% 83.5%
3245424 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.70 38.0 4.68e-01 71.3% 89.1%
3259913 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 49.0 5.41e-01 94.7% 90.7%
3778751 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.70 49.0 4.55e-01 72.3% 62.6%
3583787 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 44.0 3.97e-01 91.5% 48.8%
3220907 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.67 49.0 5.36e-01 84.0% 96.0%
4022014 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 55.0 5.01e-01 90.4% 68.3%
3594491 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 49.0 5.41e-01 90.4% 98.7%
3592412 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 55.0 4.31e-01 89.4% 71.7%
3937827 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.63 34.0 4.22e-01 70.2% 94.0%
3626895 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.63 51.0 4.69e-01 94.7% 67.5%
3237238 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 51.0 4.67e-01 91.5% 70.0%
3794544 376.1.1.115 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ, zf-Di19 0.56 47.0 3.94e-01 92.6% 63.7%
4498193 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.54 40.0 3.35e-01 79.8% 92.1%