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N1R_p28_family_protein

Euk-Vir

Flamingopox_virus_FGPVKD09

N1R_p28_family_protein__YP_009448083__Flamingopox_virus_FGPVKD09__2059380

Identity

Accession:: YP_009448083 ↗
Protein ID:: N1R_p28_family_protein
Kingdom:: euk

Quality

77.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Avipoxvirus› Flamingopox_virus_FGPVKD09

TaxID: 2059380

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-128

PDB

Domain cluster: rep: ubiquitin_ligase__YP_005296343__Cotia_virus_SPAn232__930275__D17-130

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04383.20 best	KilA-N	103.1	9.90e-30	91.0%	98.1%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5vmzA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.74	21.0	3.84e-01	70.5%	82.1%
1bm8A00	3.10.260.10	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain	0.73	56.0	6.18e-01	99.2%	99.0%
1sbxA00	3.10.260.20	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski	0.63	47.0	5.04e-01	86.1%	90.6%
2xfvA00	3.10.260.30	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain ›	0.57	45.0	4.82e-01	94.3%	96.3%
2z1cB00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.54	29.0	3.52e-01	88.5%	82.4%
2g7jA00	3.90.1150.40	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002	0.53	39.0	4.10e-01	90.2%	84.8%
3go5A01	2.40.50.330	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.51	26.0	3.21e-01	85.2%	81.7%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3179613	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.77	53.0	6.14e-01	94.3%	96.7%
3197602	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.74	57.0	5.64e-01	99.2%	76.2%
3740323	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.73	57.0	5.84e-01	99.2%	86.1%
4990102	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.72	22.0	3.74e-01	72.1%	75.6%
4572703	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.71	55.0	5.33e-01	100.0%	72.6%
3171223	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.69	55.0	5.96e-01	100.0%	98.1%
3566388	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.69	22.0	3.62e-01	72.1%	79.1%
3869223	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.68	21.0	2.68e-01	72.1%	42.5%
3783314	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.67	61.0	5.66e-01	99.2%	92.0%
4026024	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.67	21.0	3.46e-01	72.1%	75.6%
3437923	12.1.1.87 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SWIM	0.66	24.0	3.43e-01	95.9%	68.3%
3785460	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.63	57.0	5.50e-01	98.4%	87.8%
4223228	101.1.9.21 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N	0.62	44.0	5.11e-01	89.3%	100.0%
3861324	386.1.1.1 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2	0.62	20.0	3.00e-01	71.3%	64.0%
3524423	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.56	23.0	3.18e-01	77.9%	74.5%
3899940	331.4.1.9 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C	0.56	32.0	3.85e-01	100.0%	85.0%
3556708	247.1.1.38 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C	0.56	32.0	3.91e-01	100.0%	90.7%

D2 medium residues 136-249

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.78	68.0	5.00e-01	94.7%	39.7%