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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00060

Bact-Vir

N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00060

Identity

Kingdom:
phage

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 28-43_65-116
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.81 49.0 5.94e-01 94.1% 97.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.75 46.0 4.20e-01 91.2% 47.2%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.74 49.0 4.55e-01 94.1% 54.8%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.70 49.0 4.13e-01 86.8% 45.8%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 51.0 4.68e-01 100.0% 62.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.67 54.0 4.22e-01 95.6% 42.4%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 4.58e-01 100.0% 74.1%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.66 55.0 3.78e-01 94.1% 91.0%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.65 46.0 3.13e-01 100.0% 19.4%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.64 47.0 3.71e-01 91.2% 39.1%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 43.0 2.77e-01 100.0% 13.7%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.63 55.0 3.98e-01 95.6% 97.8%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 45.0 2.93e-01 100.0% 16.2%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.63 50.0 3.42e-01 92.6% 83.3%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.63 54.0 4.03e-01 95.6% 87.6%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 41.0 3.85e-01 100.0% 55.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 4.14e-01 95.6% 69.0%
2d44A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.35e-01 100.0% 35.6%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 45.0 4.04e-01 100.0% 58.9%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 53.0 3.30e-01 100.0% 28.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.33e-01 100.0% 72.8%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.57 34.0 3.74e-01 82.4% 76.5%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.57 51.0 3.32e-01 100.0% 46.1%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 51.0 3.23e-01 100.0% 27.1%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 47.0 3.05e-01 100.0% 21.2%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.56 41.0 4.09e-01 82.4% 77.0%
3p3yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.61e-01 80.9% 67.0%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.03e-01 100.0% 26.9%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 41.0 3.76e-01 100.0% 61.8%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.08e-01 100.0% 28.8%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 48.0 3.08e-01 100.0% 27.6%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 49.0 3.08e-01 100.0% 30.0%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.86e-01 100.0% 65.2%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 42.0 2.76e-01 91.2% 48.7%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.53 42.0 2.80e-01 88.2% 33.0%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.53 45.0 2.89e-01 94.1% 38.6%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.82e-01 92.6% 80.7%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 47.0 3.14e-01 100.0% 46.8%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 4.36e-01 88.2% 92.4%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 2.88e-01 98.5% 32.2%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 46.0 3.35e-01 95.6% 83.0%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 3.74e-01 100.0% 87.9%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 39.0 3.71e-01 86.8% 68.3%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.24e-01 97.1% 80.9%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 2.90e-01 100.0% 22.6%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.82e-01 100.0% 20.6%
6grrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.97e-01 100.0% 72.3%
1te0A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 38.0 3.45e-01 83.8% 91.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484246 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.76 50.0 3.09e-01 100.0% 12.3%
4960423 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.75 49.0 3.10e-01 98.5% 13.7%
5011728 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.75 54.0 4.84e-01 97.1% 54.7%
3988075 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 50.0 3.12e-01 100.0% 14.0%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.70 52.0 4.52e-01 100.0% 51.4%
3811762 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.70 48.0 3.07e-01 100.0% 15.1%
3463667 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.68 51.0 3.26e-01 100.0% 16.7%
5012633 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 56.0 3.73e-01 94.1% 94.2%
3716012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 54.0 3.38e-01 92.6% 93.1%
3281283 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.64 45.0 2.94e-01 100.0% 17.3%
None 0.63 55.0 3.35e-01 98.5% 16.4%
3421076 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.62 50.0 3.25e-01 100.0% 19.7%
4001937 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 57.0 3.80e-01 100.0% 42.1%
4175925 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.62 54.0 3.93e-01 98.5% 98.9%
3912292 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 56.0 3.49e-01 100.0% 22.3%
3990350 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 56.0 3.55e-01 100.0% 32.1%
3500968 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 56.0 3.40e-01 100.0% 24.4%
3607433 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.26e-01 100.0% 17.2%
3571692 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 55.0 3.39e-01 100.0% 27.2%
4025460 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 55.0 3.48e-01 100.0% 30.8%
3688914 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.60 42.0 3.33e-01 91.2% 35.0%
3903552 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 56.0 3.43e-01 100.0% 23.9%
3932344 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.60 46.0 2.96e-01 100.0% 16.8%
3939218 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 55.0 3.39e-01 100.0% 28.3%
3775274 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 55.0 3.33e-01 100.0% 25.0%
3465186 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.60 47.0 3.85e-01 86.8% 85.4%
3399727 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 54.0 3.33e-01 100.0% 29.2%
3451989 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 48.0 3.15e-01 91.2% 52.2%
3479960 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 54.0 3.37e-01 100.0% 26.7%
3940325 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 53.0 3.49e-01 100.0% 28.2%
4081797 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.59 41.0 3.21e-01 91.2% 33.8%
3248547 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 46.0 3.08e-01 88.2% 38.0%
3273324 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.58 52.0 3.14e-01 100.0% 19.3%
3926989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 52.0 3.29e-01 100.0% 28.7%
3211505 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.58 52.0 3.24e-01 100.0% 21.3%
4829352 5.1.2.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.58 48.0 2.88e-01 91.2% 30.1%
5029147 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 51.0 4.87e-01 98.5% 95.0%
3470543 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 52.0 3.28e-01 100.0% 23.5%
3600994 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.10e-01 100.0% 36.8%
3413293 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 52.0 3.24e-01 100.0% 25.7%
3771074 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 52.0 3.32e-01 100.0% 29.8%
3845022 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.57 51.0 2.94e-01 98.5% 13.3%
3699727 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.18e-01 100.0% 27.0%
3485317 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 51.0 2.93e-01 98.5% 13.2%
3596879 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.13e-01 100.0% 31.4%
3798461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 51.0 4.21e-01 100.0% 92.5%
143267 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.56 47.0 3.79e-01 91.2% 93.7%
3480502 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 51.0 2.93e-01 100.0% 16.1%
3735233 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.56 50.0 3.13e-01 100.0% 33.2%
3285779 1185.1.1.0 a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae 0.56 48.0 3.81e-01 97.1% 82.1%
3993563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 3.03e-01 100.0% 17.8%
3479152 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.18e-01 100.0% 26.7%
4371091 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.55 49.0 3.13e-01 100.0% 31.4%
3256387 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.55 47.0 3.60e-01 94.1% 96.8%
3181617 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.55 49.0 3.02e-01 100.0% 28.6%
3589974 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.83e-01 100.0% 92.4%
3433124 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 45.0 2.80e-01 100.0% 16.3%
5051538 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.55 47.0 3.18e-01 98.5% 82.2%
4563304 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.54 45.0 2.91e-01 92.6% 94.5%
3908594 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 48.0 3.06e-01 100.0% 27.1%
3599756 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 48.0 2.93e-01 100.0% 28.1%
3943583 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.54 47.0 2.95e-01 100.0% 27.8%
3589527 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.53 47.0 3.01e-01 100.0% 30.3%
None 0.53 47.0 3.02e-01 100.0% 38.6%
3192570 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.53 46.0 2.90e-01 98.5% 27.0%
3723616 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.53 45.0 2.82e-01 100.0% 31.4%
4494049 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.52 45.0 2.88e-01 100.0% 22.0%
4255354 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.52 45.0 2.80e-01 100.0% 29.5%
3624709 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.52 44.0 3.65e-01 100.0% 98.5%
3944258 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.51 47.0 4.10e-01 100.0% 96.0%
3495597 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 40.0 2.87e-01 92.6% 26.7%
3740435 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.51 45.0 2.87e-01 100.0% 38.2%
2429383 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.51 43.0 2.78e-01 98.5% 22.8%