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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00125
Bact-VirN5_271_007G1_scaffold_5_prodigal-single.1__X__X__00125
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-163
Domain cluster:
rep: N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00163__D70-237
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08378.18 best | NERD | 57.0 | 3.70e-15 | 71.5% | 64.9% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.72 | 45.0 | 3.97e-01 | 81.8% | 43.6% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.71 | 47.0 | 4.11e-01 | 81.8% | 45.8% |
| 1y88A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.71 | 49.0 | 5.14e-01 | 88.3% | 77.6% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.68 | 46.0 | 3.96e-01 | 81.8% | 45.4% |
| 2r1fA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.67 | 20.0 | 3.66e-01 | 81.8% | 89.7% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 48.0 | 5.15e-01 | 94.9% | 85.7% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 51.0 | 5.01e-01 | 99.3% | 74.5% |
| 6p4wB01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.65 | 43.0 | 4.75e-01 | 93.4% | 84.4% |
| 3u4qA06 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.65 | 48.0 | 4.02e-01 | 81.8% | 47.3% |
| 4r5qA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.64 | 34.0 | 2.96e-01 | 81.0% | 32.6% |
| 4i1tA02 | 3.30.70.2640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase | 0.59 | 36.0 | 4.48e-01 | 74.5% | 100.0% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.56 | 41.0 | 3.75e-01 | 90.5% | 56.5% |
| 2yzsA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.56 | 31.0 | 3.88e-01 | 76.6% | 91.3% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.50 | 39.0 | 3.18e-01 | 80.3% | 68.4% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5015831 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.88 | 74.0 | 7.50e-01 | 98.5% | 88.1% |
| 4297114 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.87 | 78.0 | 7.43e-01 | 100.0% | 82.6% |
| 4446833 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.85 | 75.0 | 7.19e-01 | 97.8% | 81.3% |
| 3591893 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.84 | 81.0 | 7.50e-01 | 100.0% | 83.0% |
| 5035773 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.83 | 58.0 | 5.75e-01 | 90.5% | 68.3% |
| 4983302 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 64.0 | 6.37e-01 | 94.2% | 79.3% |
| 3338602 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.81 | 74.0 | 6.61e-01 | 100.0% | 70.8% |
| 3813800 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.81 | 70.0 | 6.82e-01 | 100.0% | 83.3% |
| 5057713 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.80 | 60.0 | 6.27e-01 | 94.2% | 82.8% |
| 3386658 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.80 | 46.0 | 4.17e-01 | 81.0% | 44.6% |
| 4034310 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.78 | 74.0 | 6.34e-01 | 100.0% | 79.5% |
| 4941691 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.78 | 59.0 | 5.69e-01 | 94.2% | 69.5% |
| 4954341 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.77 | 46.0 | 3.89e-01 | 81.8% | 37.7% |
| 4947545 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.77 | 46.0 | 4.12e-01 | 81.8% | 43.2% |
| 4953503 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.77 | 57.0 | 4.97e-01 | 100.0% | 52.5% |
| 5057630 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.77 | 72.0 | 6.66e-01 | 100.0% | 80.6% |
| 5042023 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.76 | 46.0 | 4.08e-01 | 81.8% | 43.2% |
| 4955137 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.76 | 44.0 | 4.02e-01 | 88.3% | 43.9% |
| 5076203 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.76 | 47.0 | 4.09e-01 | 81.8% | 43.1% |
| 4943984 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 71.0 | 6.34e-01 | 100.0% | 77.3% |
| 5005960 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.75 | 45.0 | 4.05e-01 | 81.8% | 44.6% |
| 3883726 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.75 | 68.0 | 6.46e-01 | 100.0% | 82.5% |
| 4998336 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.75 | 60.0 | 5.95e-01 | 94.2% | 79.3% |
| 5073133 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.75 | 60.0 | 5.85e-01 | 94.2% | 76.7% |
| 5045797 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.74 | 46.0 | 4.06e-01 | 81.8% | 44.2% |
| 4953680 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.74 | 46.0 | 3.65e-01 | 81.8% | 32.4% |
| 4046812 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.74 | 43.0 | 3.85e-01 | 81.8% | 41.6% |
| 4936773 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.74 | 44.0 | 3.57e-01 | 86.1% | 32.2% |
| 4929251 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.74 | 45.0 | 4.01e-01 | 81.8% | 43.7% |
| 4999640 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.74 | 46.0 | 3.91e-01 | 88.3% | 41.0% |
| 4966546 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.73 | 44.0 | 3.50e-01 | 86.1% | 30.6% |
| 2798007 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.72 | 45.0 | 3.95e-01 | 81.8% | 42.9% |
| 3282786 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 68.0 | 5.95e-01 | 100.0% | 72.3% |
| 4387318 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.72 | 46.0 | 3.81e-01 | 81.0% | 37.4% |
| 4951715 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.71 | 48.0 | 5.18e-01 | 88.3% | 80.9% |
| 4933915 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.71 | 63.0 | 5.92e-01 | 100.0% | 79.4% |
| 4876381 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 47.0 | 4.53e-01 | 81.8% | 60.1% |
| 4290285 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 47.0 | 3.84e-01 | 81.0% | 37.6% |
| 4959669 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 44.0 | 3.59e-01 | 81.8% | 35.0% |
| 3480310 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 48.0 | 4.06e-01 | 81.8% | 42.7% |
| 3506045 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 44.0 | 3.94e-01 | 82.5% | 45.9% |
| 4955851 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 43.0 | 3.76e-01 | 84.7% | 42.5% |
| 4555637 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.69 | 44.0 | 4.03e-01 | 81.8% | 48.9% |
| 3221910 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.69 | 49.0 | 3.90e-01 | 81.8% | 38.1% |
| 5051988 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 47.0 | 4.98e-01 | 89.8% | 79.2% |
| 5072639 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 62.0 | 5.86e-01 | 97.8% | 83.0% |
| 4983658 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.68 | 53.0 | 5.19e-01 | 88.3% | 75.9% |
| 2439587 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 45.0 | 3.72e-01 | 88.3% | 39.1% |
| 5044802 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 57.0 | 4.84e-01 | 94.2% | 56.7% |
| 3629495 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 48.0 | 3.73e-01 | 81.8% | 34.5% |
| 4002824 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 48.0 | 3.70e-01 | 81.8% | 33.9% |
| 5060524 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 44.0 | 3.81e-01 | 81.8% | 43.4% |
| 3578270 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.66 | 50.0 | 4.43e-01 | 85.4% | 55.8% |
| 4556252 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.66 | 52.0 | 3.89e-01 | 81.8% | 48.1% |
| 4958249 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.66 | 52.0 | 4.15e-01 | 81.8% | 46.3% |
| 3102571 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 52.0 | 5.13e-01 | 92.7% | 79.0% |
| 3976411 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.65 | 46.0 | 3.68e-01 | 81.8% | 39.0% |
| 2983287 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 50.0 | 5.12e-01 | 96.4% | 83.5% |
| 4389411 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.64 | 47.0 | 3.70e-01 | 81.0% | 39.2% |
| 4457776 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.63 | 47.0 | 3.72e-01 | 82.5% | 40.0% |
| 4101307 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 46.0 | 2.66e-01 | 81.8% | 8.3% |
| 4157798 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.62 | 49.0 | 4.80e-01 | 98.5% | 76.0% |
| 5046037 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 48.0 | 3.96e-01 | 81.8% | 84.3% |
| 4150493 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 49.0 | 4.12e-01 | 94.2% | 52.1% |
| 5041629 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.60 | 42.0 | 4.62e-01 | 94.2% | 90.0% |
| 4959884 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.59 | 22.0 | 3.45e-01 | 98.5% | 85.5% |
| 4927733 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 50.0 | 4.74e-01 | 96.4% | 76.4% |
| 3262617 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 37.0 | 4.11e-01 | 75.2% | 79.1% |
| 5032419 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 49.0 | 4.29e-01 | 94.2% | 75.6% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.54 | 25.0 | 2.96e-01 | 97.8% | 60.0% |
| 3260153 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.51 | 44.0 | 3.66e-01 | 92.7% | 86.7% |
| 5005553 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.51 | 38.0 | 3.12e-01 | 79.6% | 56.7% |