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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00127
Bact-VirN5_271_007G1_scaffold_5_prodigal-single.1__X__X__00127
Identity
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-87
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00570.29 best | HRDC | 40.8 | 2.40e-10 | 84.2% | 92.7% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rhfA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.93 | 79.0 | 8.19e-01 | 93.9% | 96.1% |
| 1wudA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.88 | 75.0 | 7.80e-01 | 95.1% | 97.4% |
| 1yt3A02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.86 | 79.0 | 7.35e-01 | 100.0% | 81.8% |
| 5c0yA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.82 | 77.0 | 7.35e-01 | 100.0% | 91.4% |
| 2dgzA01 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.81 | 70.0 | 6.80e-01 | 95.1% | 85.4% |
| 4nlbA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.81 | 74.0 | 7.08e-01 | 100.0% | 88.3% |
| 3safA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.80 | 73.0 | 6.84e-01 | 100.0% | 85.0% |
| 2rrdA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.79 | 68.0 | 6.35e-01 | 95.1% | 76.2% |
| 3cymA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.78 | 71.0 | 6.26e-01 | 100.0% | 90.8% |
| 3cymA03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.76 | 67.0 | 6.57e-01 | 96.3% | 97.7% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.64 | 50.0 | 4.90e-01 | 86.6% | 92.4% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.62 | 51.0 | 4.62e-01 | 93.9% | 78.0% |
| 6ks6Z02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.61 | 49.0 | 4.58e-01 | 91.5% | 97.2% |
| 2hcfA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 39.0 | 4.33e-01 | 87.8% | 83.1% |
| 1sigA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.60 | 47.0 | 3.21e-01 | 91.5% | 23.0% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 42.0 | 4.18e-01 | 91.5% | 75.9% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.55 | 40.0 | 3.87e-01 | 96.3% | 67.4% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 39.0 | 4.10e-01 | 87.8% | 88.7% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 41.0 | 4.17e-01 | 93.9% | 84.1% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 32.0 | 3.18e-01 | 96.3% | 57.1% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.53 | 38.0 | 3.82e-01 | 84.1% | 75.3% |
| 1sdiA00 | 1.10.3890.10 | Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like | 0.52 | 42.0 | 3.16e-01 | 89.0% | 89.2% |
| 2v6eA02 | 1.20.1440.270 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.50 | 42.0 | 3.66e-01 | 93.9% | 96.1% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4981164 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.94 | 76.0 | 8.21e-01 | 89.0% | 98.6% |
| 167777 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.93 | 79.0 | 8.19e-01 | 93.9% | 96.1% |
| 4967739 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.91 | 78.0 | 7.53e-01 | 95.1% | 82.2% |
| 3285909 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.90 | 79.0 | 8.00e-01 | 95.1% | 93.8% |
| 5001752 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.90 | 77.0 | 5.45e-01 | 95.1% | 33.6% |
| 5058807 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.90 | 76.0 | 7.70e-01 | 95.1% | 91.3% |
| 3830249 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.88 | 75.0 | 7.45e-01 | 96.3% | 87.1% |
| 3213202 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.88 | 77.0 | 7.45e-01 | 95.1% | 84.4% |
| 4950717 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.88 | 74.0 | 7.37e-01 | 95.1% | 87.1% |
| 3274105 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.87 | 76.0 | 7.58e-01 | 95.1% | 89.4% |
| 3249714 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.87 | 77.0 | 7.85e-01 | 95.1% | 96.2% |
| 3421668 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.87 | 77.0 | 6.91e-01 | 95.1% | 70.0% |
| 3964818 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.87 | 76.0 | 7.90e-01 | 93.9% | 100.0% |
| 3965631 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.87 | 74.0 | 7.50e-01 | 91.5% | 92.5% |
| 3282621 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.87 | 81.0 | 7.38e-01 | 100.0% | 79.0% |
| 3964828 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.86 | 81.0 | 7.82e-01 | 100.0% | 92.2% |
| 3980946 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.86 | 77.0 | 7.42e-01 | 100.0% | 86.7% |
| 3970074 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 80.0 | 7.76e-01 | 100.0% | 91.1% |
| 2980 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.86 | 79.0 | 7.30e-01 | 100.0% | 80.2% |
| 4032181 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.86 | 76.0 | 7.50e-01 | 98.8% | 90.6% |
| 3817662 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.85 | 76.0 | 7.22e-01 | 95.1% | 82.1% |
| 4026304 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.84 | 74.0 | 7.56e-01 | 93.9% | 97.5% |
| 3627604 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.84 | 73.0 | 6.77e-01 | 95.1% | 76.0% |
| 3404325 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.84 | 74.0 | 7.48e-01 | 95.1% | 96.2% |
| 3744412 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.84 | 72.0 | 7.00e-01 | 95.1% | 84.4% |
| 4024408 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.83 | 78.0 | 6.75e-01 | 100.0% | 73.3% |
| 4347564 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.83 | 77.0 | 7.05e-01 | 100.0% | 79.0% |
| 3930942 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.83 | 74.0 | 6.85e-01 | 95.1% | 81.0% |
| 2105273 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.83 | 77.0 | 7.25e-01 | 100.0% | 85.7% |
| 3968116 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.83 | 76.0 | 6.97e-01 | 100.0% | 78.1% |
| 3258486 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.83 | 76.0 | 6.94e-01 | 100.0% | 77.1% |
| 3742340 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.83 | 77.0 | 6.78e-01 | 100.0% | 73.0% |
| 3569105 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.82 | 69.0 | 6.57e-01 | 95.1% | 77.9% |
| 3363242 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.82 | 77.0 | 6.54e-01 | 100.0% | 67.2% |
| 3940948 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.82 | 76.0 | 7.05e-01 | 100.0% | 86.0% |
| 4148075 | 102.1.1.42 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNAseD_HRDC_C | 0.82 | 62.0 | 6.78e-01 | 90.2% | 100.0% |
| 4353638 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.82 | 76.0 | 7.05e-01 | 100.0% | 83.0% |
| 3228708 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.82 | 72.0 | 6.46e-01 | 95.1% | 73.6% |
| 4136937 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.82 | 76.0 | 7.54e-01 | 100.0% | 96.5% |
| 3480507 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.81 | 71.0 | 6.67e-01 | 95.1% | 79.0% |
| 2983 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.81 | 75.0 | 6.67e-01 | 100.0% | 76.1% |
| 3509823 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.81 | 75.0 | 6.98e-01 | 100.0% | 82.0% |
| 4524802 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.81 | 74.0 | 6.90e-01 | 100.0% | 83.0% |
| 4026864 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.81 | 71.0 | 6.86e-01 | 95.1% | 85.6% |
| 3600259 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 74.0 | 4.58e-01 | 100.0% | 18.9% |
| 3204650 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.81 | 74.0 | 7.06e-01 | 100.0% | 86.3% |
| 3691110 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.80 | 74.0 | 6.46e-01 | 100.0% | 69.2% |
| 3185972 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.79 | 72.0 | 6.42e-01 | 100.0% | 71.3% |
| 3303348 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.78 | 72.0 | 6.84e-01 | 100.0% | 87.4% |
| 1284697 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.78 | 71.0 | 6.70e-01 | 100.0% | 85.9% |
| 3955983 | 102.1.1.36 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_A_exoN | 0.78 | 68.0 | 6.34e-01 | 96.3% | 89.3% |
| 4087630 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.77 | 68.0 | 6.27e-01 | 97.6% | 76.2% |
| 3785934 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.76 | 65.0 | 6.17e-01 | 95.1% | 80.0% |
| 4636096 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.76 | 64.0 | 6.46e-01 | 93.9% | 92.5% |
| 2043024 | 102.1.1.36 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_A_exoN | 0.76 | 65.0 | 6.43e-01 | 93.9% | 97.7% |
| 3324310 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.75 | 69.0 | 6.13e-01 | 100.0% | 93.0% |
| 3595507 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.73 | 62.0 | 5.48e-01 | 91.5% | 67.0% |
| 4663376 | 3593.1.1.1 ↗ | a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N | 0.60 | 51.0 | 3.29e-01 | 93.9% | 32.6% |
| 2738695 | 148.1.3.22 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_5 | 0.57 | 50.0 | 4.59e-01 | 100.0% | 77.8% |
| 3689706 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 41.0 | 3.32e-01 | 82.9% | 95.2% |