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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00172

Bact-Vir

N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00172

Identity

Kingdom:
phage

Quality

76.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-133
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00929.32 best RNase_T 48.0 2.90e-12 91.6% 59.8%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.89 65.0 5.91e-01 99.2% 59.4%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.86 72.0 7.09e-01 100.0% 82.6%
1j54A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.85 77.0 6.84e-01 100.0% 70.7%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.83 77.0 6.64e-01 100.0% 66.1%
1wljA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 62.0 5.61e-01 100.0% 61.9%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.79 75.0 6.34e-01 100.0% 67.5%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.77 72.0 6.15e-01 100.0% 66.2%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 41.0 4.15e-01 100.0% 59.5%
1zcjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 37.0 3.29e-01 100.0% 38.0%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.62 35.0 4.51e-01 77.9% 97.3%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 44.0 3.65e-01 100.0% 45.5%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.58 42.0 4.33e-01 100.0% 78.0%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 47.0 4.18e-01 100.0% 63.6%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 39.0 4.40e-01 100.0% 94.9%
4gicA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 32.0 3.14e-01 99.2% 51.4%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 45.0 4.41e-01 100.0% 82.1%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 38.0 4.33e-01 100.0% 100.0%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 39.0 4.30e-01 100.0% 98.1%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 4.19e-01 100.0% 100.0%
1z05A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.71e-01 100.0% 68.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016375 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.91 76.0 6.57e-01 100.0% 60.0%
4103309 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.91 76.0 6.28e-01 100.0% 53.8%
3587075 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.90 75.0 6.73e-01 100.0% 66.5%
4033087 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.90 75.0 6.10e-01 100.0% 51.4%
3957139 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.89 74.0 6.25e-01 100.0% 56.0%
3272730 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 75.0 6.42e-01 100.0% 59.1%
3988496 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 73.0 6.02e-01 100.0% 51.6%
3280151 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 75.0 6.52e-01 100.0% 61.6%
3942728 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 74.0 6.17e-01 100.0% 53.8%
3502270 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 66.0 5.92e-01 100.0% 58.2%
3088601 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 74.0 6.64e-01 100.0% 65.7%
3953516 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 73.0 6.27e-01 100.0% 57.4%
4586442 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 74.0 6.08e-01 100.0% 51.8%
4640906 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.88 73.0 6.28e-01 100.0% 57.9%
3945113 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.88 76.0 6.72e-01 100.0% 65.6%
3963965 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.88 77.0 6.88e-01 100.0% 68.6%
4037317 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.88 73.0 6.18e-01 100.0% 55.6%
4298195 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.87 73.0 6.16e-01 100.0% 56.5%
3947357 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.87 74.0 6.44e-01 100.0% 62.8%
4432985 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.87 73.0 6.17e-01 100.0% 57.0%
3988431 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.86 69.0 6.13e-01 100.0% 60.6%
4052322 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.86 72.0 6.22e-01 100.0% 60.0%
5062283 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.85 75.0 6.31e-01 100.0% 58.8%
5024550 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 73.0 6.43e-01 99.2% 65.6%
4672299 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 76.0 6.47e-01 100.0% 63.4%
4102293 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.80 67.0 5.84e-01 100.0% 60.5%
3893443 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.80 72.0 5.89e-01 100.0% 55.9%
4293021 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 75.0 6.10e-01 100.0% 62.2%
3719456 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 74.0 6.22e-01 100.0% 62.9%
3615656 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 75.0 6.20e-01 100.0% 61.4%
4019286 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 64.0 6.34e-01 100.0% 81.5%
2410148 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 75.0 6.11e-01 100.0% 61.9%
3497103 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 75.0 5.91e-01 100.0% 56.7%
3491266 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 74.0 6.13e-01 100.0% 63.2%
3402227 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 74.0 6.06e-01 100.0% 64.4%
3851543 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 74.0 6.10e-01 100.0% 62.7%
3626807 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.78 73.0 5.48e-01 100.0% 61.2%
3577888 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.77 72.0 5.57e-01 100.0% 59.6%
3627091 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 72.0 5.78e-01 100.0% 58.7%
3220453 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.76 71.0 5.40e-01 100.0% 59.7%
3509094 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 71.0 5.82e-01 100.0% 62.7%
3624820 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.74 69.0 5.12e-01 100.0% 45.2%
1866795 2484.1.1.91 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.74 70.0 5.66e-01 100.0% 59.8%
4290521 2484.1.1.91 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like 0.74 70.0 5.39e-01 100.0% 51.3%
3809436 2484.1.1.45 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.73 68.0 5.24e-01 100.0% 56.1%
3742269 2484.1.1.90 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C 0.73 59.0 5.04e-01 100.0% 55.5%
4028087 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.71 49.0 4.10e-01 100.0% 42.8%
3271756 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 47.0 4.24e-01 100.0% 51.4%
3719170 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 61.0 5.01e-01 100.0% 69.8%
4958553 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 58.0 4.86e-01 100.0% 67.7%
3994654 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.62 49.0 3.97e-01 100.0% 44.9%
3838393 2484.1.1.132 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo2 0.62 58.0 5.37e-01 100.0% 95.6%
5019105 2484.1.1.339 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › acVLRF1 0.61 46.0 4.59e-01 100.0% 77.4%
4983045 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.57 44.0 4.36e-01 100.0% 77.1%
4947126 2484.1.1.329 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_3 0.55 42.0 4.30e-01 100.0% 83.1%
3495316 2007.2.3.24 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF27561 0.54 46.0 3.33e-01 94.7% 93.5%
2629619 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 32.0 3.82e-01 81.7% 92.9%
3975175 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.51 39.0 4.11e-01 100.0% 90.0%
4989880 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.50 44.0 4.37e-01 100.0% 93.3%
D2 high residues 155-226
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.95e-01 80.6% 63.0%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 39.0 3.98e-01 76.4% 83.1%
3b4uA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 37.0 2.58e-01 73.6% 87.1%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 3.55e-01 94.4% 87.1%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.51 37.0 3.47e-01 80.6% 62.5%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 37.0 2.98e-01 79.2% 96.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3811150 3525.1.1.1 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.66 49.0 4.91e-01 80.6% 85.3%
4625344 152.1.2.0 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit 0.60 45.0 4.55e-01 80.6% 84.3%
332237 2002.1.1.29 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.55 38.0 2.59e-01 73.6% 86.8%
4354455 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.52 39.0 3.94e-01 100.0% 84.3%
3363261 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.51 42.0 3.48e-01 91.7% 84.4%
4030877 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.51 40.0 3.00e-01 93.1% 92.3%