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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00217

Bact-Vir

N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00217

Identity

Kingdom:
phage

Quality

75.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 110-198
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.74 55.0 5.59e-01 100.0% 78.7%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.74 53.0 5.20e-01 100.0% 70.2%
3cnrB00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 47.0 4.65e-01 93.3% 74.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 50.0 4.82e-01 100.0% 74.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 46.0 4.35e-01 89.9% 65.4%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 38.0 3.92e-01 97.8% 65.9%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.78e-01 92.1% 48.3%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.46e-01 98.9% 51.9%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 4.65e-01 94.4% 84.5%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 52.0 4.61e-01 100.0% 76.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 4.14e-01 100.0% 64.3%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 3.64e-01 100.0% 59.6%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.43e-01 83.1% 100.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 49.0 4.67e-01 100.0% 83.8%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.55 38.0 4.00e-01 96.6% 81.8%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 41.0 2.68e-01 79.8% 18.1%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 4.19e-01 94.4% 73.9%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.98e-01 89.9% 73.9%
1n26A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.50e-01 97.8% 58.7%
1f8nA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 43.0 3.74e-01 96.6% 55.9%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.74e-01 96.6% 91.5%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.53 39.0 3.84e-01 98.9% 71.9%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.56e-01 97.8% 60.7%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.51e-01 97.8% 66.7%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 35.0 3.86e-01 97.8% 91.3%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.63e-01 93.3% 79.7%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 38.0 4.10e-01 94.4% 94.6%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.71e-01 98.9% 65.2%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.75e-01 100.0% 87.6%
1flkA00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.50 41.0 3.22e-01 92.1% 73.2%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 25.0 2.84e-01 77.5% 60.6%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972500 1.1.7.53 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RcpC 0.79 73.0 6.57e-01 100.0% 86.7%
3281705 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 69.0 6.62e-01 100.0% 86.0%
3957568 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 69.0 6.68e-01 100.0% 94.9%
5012955 1.1.7.128 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 0.74 62.0 6.34e-01 100.0% 92.9%
3954857 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 67.0 6.54e-01 100.0% 89.8%
3924486 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.69 62.0 3.86e-01 100.0% 20.6%
3728657 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 52.0 5.24e-01 100.0% 84.4%
4636302 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 5.29e-01 100.0% 75.7%
3723475 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 4.87e-01 100.0% 65.4%
3591908 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 56.0 4.47e-01 100.0% 62.8%
3724417 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 56.0 4.73e-01 100.0% 68.7%
3504834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.80e-01 88.8% 98.3%
4285594 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.62 44.0 3.96e-01 94.4% 52.8%
3711953 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 53.0 4.88e-01 100.0% 73.0%
2771395 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.61 47.0 4.45e-01 93.3% 67.6%
5024522 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 55.0 4.49e-01 100.0% 55.8%
3615287 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 51.0 4.87e-01 100.0% 79.0%
4441129 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.60 49.0 4.51e-01 100.0% 68.3%
3744112 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 50.0 4.69e-01 100.0% 76.4%
4607738 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 45.0 4.25e-01 92.1% 67.3%
1108154 12.1.1.41 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5605 0.58 50.0 4.68e-01 94.4% 86.1%
3810562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.65e-01 92.1% 93.3%
4950495 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.57 41.0 4.32e-01 96.6% 85.0%
3973282 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.57 50.0 4.72e-01 100.0% 80.9%
4936008 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.57 47.0 4.61e-01 100.0% 84.2%
3981111 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.56 50.0 4.18e-01 100.0% 57.4%
3973696 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 49.0 4.42e-01 98.9% 70.4%
4061575 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.56 41.0 4.10e-01 96.6% 75.6%
1036625 3122.1.1.1 a+b complex topology › MESD › MESD › MESD › Mesd 0.56 40.0 4.22e-01 97.8% 85.9%
4372074 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.56 48.0 4.23e-01 98.9% 62.9%
4674170 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 43.0 3.92e-01 92.1% 61.7%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 42.0 3.98e-01 92.1% 67.3%
4400596 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 42.0 3.52e-01 92.1% 46.9%
3499232 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.01e-01 100.0% 32.3%
4024939 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.05e-01 100.0% 66.4%
3998555 327.11.2.6 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_10 0.52 40.0 4.12e-01 97.8% 93.8%
3699312 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 38.0 2.47e-01 79.8% 18.4%
3249243 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 38.0 3.56e-01 98.9% 62.7%
140303 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 44.0 3.76e-01 100.0% 88.2%
3910660 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 38.0 3.37e-01 97.8% 52.9%
4024469 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.50 42.0 3.73e-01 94.4% 86.7%
D2 medium residues 34-104
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3frnA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.87 78.0 8.01e-01 97.2% 100.0%
3g8rA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.83 72.0 6.83e-01 95.8% 80.2%
1ameA00 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.83 70.0 7.30e-01 95.8% 97.0%
1wvoA00 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.81 71.0 6.87e-01 100.0% 84.8%
2wqpA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.80 70.0 6.94e-01 94.4% 90.4%
1vliA02 3.90.1210.10 Alpha Beta › Alpha-Beta Complex › Type Iii Antifreeze Protein Isoform Hplc 12 › Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 0.78 64.0 6.67e-01 88.7% 95.4%
3k3sH01 2.30.130.110 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.59 52.0 4.97e-01 95.8% 81.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 34.0 3.09e-01 78.9% 44.9%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 3.26e-01 77.5% 56.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 33.0 3.43e-01 80.3% 70.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 31.0 3.28e-01 78.9% 69.4%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 31.0 3.23e-01 77.5% 66.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972515 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.92 74.0 8.04e-01 88.7% 100.0%
3962108 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.91 82.0 8.27e-01 95.8% 95.7%
3386541 70.3.1.18 beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA 0.91 79.0 8.23e-01 94.4% 100.0%
1395523 70.3.1.18 beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA 0.90 78.0 8.20e-01 93.0% 100.0%
3840012 70.3.1.18 beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA 0.90 72.0 7.80e-01 88.7% 100.0%
3983417 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.89 77.0 8.07e-01 93.0% 100.0%
1005319 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.89 76.0 7.97e-01 91.5% 98.5%
4046971 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.89 77.0 8.05e-01 93.0% 100.0%
3970891 70.3.1.18 beta barrels › beta-clip › SET domain-like › SET domain-like › ChapFlgA 0.89 77.0 8.10e-01 93.0% 100.0%
4268048 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.89 76.0 7.90e-01 94.4% 98.5%
4588640 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.88 80.0 8.06e-01 97.2% 97.1%
185265 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.88 77.0 8.03e-01 94.4% 100.0%
4678813 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.86 69.0 7.47e-01 90.1% 100.0%
5078504 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.85 73.0 7.62e-01 100.0% 100.0%
170859 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.83 72.0 7.09e-01 95.8% 87.8%
4942460 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.81 69.0 7.08e-01 95.8% 94.2%
5029069 70.3.1.3 beta barrels › beta-clip › SET domain-like › SET domain-like › SAF 0.80 70.0 6.93e-01 94.4% 92.0%
1005527 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.75 68.0 6.17e-01 98.6% 77.4%
3923470 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 37.0 3.72e-01 91.5% 75.7%