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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00231

Bact-Vir

N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00231

Identity

Kingdom:
phage

Quality

64.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-105
PDB
D2 high residues 108-223
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22751.2 best DUF488-N3a 44.7 2.10e-11 91.4% 67.0%
PF04343.19 DUF488 26.0 1.70e-05 69.8% 59.5%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g5jA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.74 64.0 6.17e-01 94.0% 88.5%
2qbuA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.69 62.0 5.95e-01 98.3% 96.2%
3hh1A00 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.63 56.0 5.71e-01 99.1% 98.2%
3ndcA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.63 54.0 5.51e-01 97.4% 94.7%
2e2oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 49.0 4.35e-01 85.3% 97.6%
1pjqA04 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.60 52.0 5.22e-01 98.3% 95.7%
3nutC01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.59 50.0 5.11e-01 98.3% 95.6%
4iqyB00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.58 51.0 4.16e-01 96.6% 69.4%
3hr7B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 4.02e-01 98.3% 61.9%
2f6rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 51.0 4.07e-01 100.0% 59.1%
1vpyA00 3.20.20.410 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Protein of unknown function UPF0759 0.56 49.0 3.85e-01 97.4% 99.6%
2vqmA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.56 48.0 3.40e-01 97.4% 47.6%
2vliB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 4.09e-01 98.3% 61.3%
6b4kB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 4.37e-01 100.0% 92.4%
2bdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 4.01e-01 96.6% 60.8%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.55 44.0 3.39e-01 88.8% 100.0%
3v2bA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.55 47.0 4.13e-01 96.6% 93.8%
4a8jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.60e-01 98.3% 67.9%
4h0oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 3.83e-01 96.6% 83.4%
6znpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.80e-01 96.6% 82.1%
2plrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.85e-01 99.1% 59.4%
1ltqA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 46.0 4.30e-01 98.3% 95.8%
2v1xA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.65e-01 95.7% 65.9%
7pliF02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 4.16e-01 97.4% 100.0%
6yhrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.72e-01 96.6% 83.5%
2zpaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 4.24e-01 97.4% 89.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980726 2007.2.5.7 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › DUF488-N3a 0.86 76.0 7.67e-01 92.2% 100.0%
4967736 2007.2.3.15 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 0.85 78.0 7.20e-01 96.6% 99.3%
5018591 2007.2.3.15 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 0.83 76.0 6.63e-01 96.6% 86.1%
5003310 7550.1.1.4 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 0.75 69.0 6.47e-01 95.7% 97.8%
5000711 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.67 60.0 4.65e-01 100.0% 54.0%
5077632 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.66 60.0 4.64e-01 99.1% 52.5%
3970290 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.65 57.0 5.81e-01 99.1% 95.7%
4029325 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.65 58.0 4.30e-01 99.1% 52.7%
5066260 2004.1.1.94 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.65 58.0 4.48e-01 100.0% 49.8%
4982230 4244.1.1.0 a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like 0.64 56.0 4.64e-01 96.6% 96.7%
4886704 2004.1.1.761 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PapZ_C 0.62 56.0 5.57e-01 98.3% 96.7%
5035716 2004.1.1.141 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N 0.61 55.0 4.72e-01 99.1% 93.0%
4967831 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.61 54.0 5.43e-01 96.6% 94.8%
3445321 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.61 54.0 4.12e-01 98.3% 52.2%
3679263 103.2.1.3 alpha arrays › RuvA-C › ATP cone › ATP cone › PF28345 0.61 54.0 3.98e-01 98.3% 45.2%
3590767 2004.1.1.88 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.60 54.0 4.34e-01 99.1% 55.2%
3319793 2004.1.1.778 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18, PF28345 0.60 54.0 4.08e-01 98.3% 50.2%
4824477 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.60 54.0 5.14e-01 98.3% 88.1%
3960537 7550.1.1.0 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain 0.60 50.0 5.26e-01 97.4% 100.0%
3715756 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.60 52.0 5.07e-01 98.3% 83.8%
3681103 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.60 53.0 4.16e-01 98.3% 50.4%
4880839 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.60 52.0 5.13e-01 96.6% 89.5%
4489684 7572.1.1.2 a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PapZ_C 0.60 53.0 5.26e-01 98.3% 94.3%
2790699 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.59 52.0 5.18e-01 96.6% 96.7%
3507985 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.59 53.0 5.07e-01 99.1% 96.3%
1937225 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.59 50.0 5.12e-01 98.3% 96.5%
3003338 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.58 52.0 5.10e-01 100.0% 96.8%
4927815 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.58 45.0 3.84e-01 98.3% 50.0%
4117003 7550.1.1.1 a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase 0.58 51.0 5.19e-01 97.4% 97.4%
3704272 2004.1.1.175 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.58 52.0 3.78e-01 100.0% 47.8%
4934321 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.58 43.0 3.71e-01 97.4% 48.4%
3410203 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 4.33e-01 98.3% 92.1%
3607147 2004.1.1.210 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ERCC3_RAD25_C 0.57 50.0 3.89e-01 98.3% 75.8%
4470699 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.57 51.0 4.23e-01 99.1% 62.6%
4992166 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.57 49.0 3.99e-01 97.4% 61.7%
4969776 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.56 50.0 4.17e-01 99.1% 63.4%
3399838 2002.1.1.90 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.56 48.0 3.59e-01 97.4% 90.9%
2327192 2004.7.1.0 a/b three-layered sandwiches › P-loop domains-like › VP4 N-terminal domain › VP4 N-terminal domain 0.56 41.0 3.82e-01 100.0% 60.7%
4518593 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.55 49.0 4.07e-01 98.3% 62.4%
3708933 2004.1.1.65 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K 0.55 48.0 3.83e-01 98.3% 50.4%
3959633 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 3.91e-01 95.7% 82.3%
3754962 2004.1.1.65 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K 0.55 49.0 3.80e-01 99.1% 51.9%
4367798 2004.1.1.65 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K 0.55 49.0 4.00e-01 99.1% 55.0%
4991188 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 49.0 3.56e-01 99.1% 49.6%
3688753 2004.1.1.65 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K 0.55 47.0 3.86e-01 99.1% 57.4%
3952719 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.55 46.0 3.78e-01 95.7% 76.5%
4995123 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.78e-01 98.3% 74.2%
5070414 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 46.0 3.78e-01 97.4% 74.3%
3715351 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.83e-01 99.1% 50.9%
5026034 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.53 47.0 4.28e-01 99.1% 98.7%
4943170 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.52 46.0 3.97e-01 100.0% 96.9%
4435067 2004.1.1.70 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK 0.52 46.0 3.62e-01 99.1% 61.6%
4218528 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 45.0 3.79e-01 96.6% 85.0%
3971567 2488.1.1.0 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.52 41.0 3.50e-01 86.2% 57.4%
4423010 2004.1.1.28 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.52 45.0 4.26e-01 99.1% 95.2%
5052045 7592.1.1.0 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains 0.51 44.0 3.81e-01 98.3% 78.9%
3933239 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.51 44.0 4.01e-01 100.0% 95.2%
4248117 2004.1.1.28 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK 0.50 44.0 4.21e-01 99.1% 96.4%
5063776 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.50 43.0 3.53e-01 99.1% 60.7%